RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 SP110Q9HB58 689 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 SAYSD1Q9NPB0 183 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 RBM22Q9NW64 420 aaKnown RBP eCLIP14.55□□□□□ -0.08
USP39-220ENST00000613444 NINJ2Q9NZG7 142 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 RSPH14Q9UHP6 348 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 CLEC4EQ9ULY5 219 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 MIA3Q5JRA6 1907 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 DENND4AQ7Z401 1863 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 AVILO75366 819 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 TTC4O95801 387 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 GLDCP23378 1020 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 IFNAR2P48551 515 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 ARL4CP56559 192 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 CDK16Q00536 496 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 MTM1Q13496 603 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 ANO4Q32M45 955 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 MPPE1Q53F39 396 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 ITPRIPL1Q6GPH6 555 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 ZNF783Q6ZMS7 281 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 CENPUQ71F23 418 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 CARNMT1Q8N4J0 409 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 OXNAD1Q96HP4 312 aaPredicted RBP14.54□□□□□ -0.08
USP39-220ENST00000613444 LINC00597Q9H2U6 94 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 GLOD4Q9HC38 313 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 LMCD1Q9NZU5 365 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 CLEC1BQ9P126 229 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 EIF3HO15372 352 aaKnown RBP eCLIP14.54□□□□□ -0.08
USP39-220ENST00000613444 KDELR3O43731 214 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 NUDT17P0C025 328 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 FSHRP23945 695 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 MZF1P28698 734 aaPredicted RBP14.54□□□□□ -0.08
USP39-220ENST00000613444 RENBPP51606 427 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 PDIA2Q13087 525 aaKnown RBP14.54□□□□□ -0.08
USP39-220ENST00000613444 SLC29A2Q14542 456 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 KYNUQ16719 465 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 CFAP58Q5T655 872 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 RNF219Q5W0B1 726 aaPredicted RBP14.54□□□□□ -0.08
USP39-220ENST00000613444 TPGS1Q6ZTW0 290 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 CEP128Q6ZU80 1094 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 DDI1Q8WTU0 396 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 FGF13Q92913 245 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 BHMTQ93088 406 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 PABPC5Q96DU9 382 aaKnown RBP14.54□□□□□ -0.08
USP39-220ENST00000613444 C9orf72Q96LT7 481 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 FCRL5Q96RD9 977 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 FRMD8Q9BZ67 464 aaPredicted RBP14.54□□□□□ -0.08
USP39-220ENST00000613444 PLAAQ9Y263 795 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 ACTL7AQ9Y615 435 aa14.54□□□□□ -0.08
USP39-220ENST00000613444 TYW5A2RUC4 315 aaKnown RBP14.53□□□□□ -0.08
USP39-220ENST00000613444 GOLGA6BA6NDN3 693 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 E7EVH7 732 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 H0Y626 953 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 SUN1O94901 812 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 AP2A1O95782 977 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 CTC1Q2NKJ3 1217 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 HP1BP3Q5SSJ5 553 aaPredicted RBP14.53□□□□□ -0.08
USP39-220ENST00000613444 MARC1Q5VT66 337 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 PPP1R21Q6ZMI0 780 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 LEKR1Q6ZMV7 388 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 TMEM25Q86YD3 366 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 IGDCC3Q8IVU1 814 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 PDIK1LQ8N165 341 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 PGBD5Q8N414 524 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 OR2W6PQ8NHA6 318 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 LMLNQ96KR4 655 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 ZNF599Q96NL3 588 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 ASB16Q96NS5 453 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 FEM1AQ9BSK4 669 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 S1PR5Q9H228 398 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 LRRC4CQ9HCJ2 640 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 PLK2Q9NYY3 685 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 TEX264Q9Y6I9 313 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 UNC80Q8N2C7 3258 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 ZMPSTE24O75844 475 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 CD160O95971 181 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 PENKP01210 267 aaPredicted RBP14.53□□□□□ -0.08
USP39-220ENST00000613444 SHBGP04278 402 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 DLX2Q07687 328 aaPredicted RBP14.53□□□□□ -0.08
USP39-220ENST00000613444 OLIG2Q13516 323 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 IHHQ14623 411 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 FAM78AQ5JUQ0 283 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 TMCO4Q5TGY1 634 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 IL31Q6EBC2 164 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 ZNF354CQ86Y25 554 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 ZBED8Q8IZ13 594 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 CELF5Q8N6W0 485 aaKnown RBP14.53□□□□□ -0.08
USP39-220ENST00000613444 SPATA22Q8NHS9 363 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 SPON2Q9BUD6 331 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 KIF9Q9HAQ2 790 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 ATP13A1Q9HD20 1204 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 TBC1D14Q9P2M4 693 aa14.53□□□□□ -0.08
USP39-220ENST00000613444 ANKRD36A6QL64 1941 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 MUSKO15146 869 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 TBX10O75333 385 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 ACSL3O95573 720 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 MLNP12872 115 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 HOXB8P17481 243 aaPredicted RBP14.52□□□□□ -0.08
USP39-220ENST00000613444 VIPR2P41587 438 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 MMP13P45452 471 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 ARF5P84085 180 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms