RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 GOLGA6L7A0A1B0GV03 622 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 GOLGA6L4A6NEF3 574 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 A6NNZ2 444 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 TOR1BO14657 336 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 TPP1O14773 563 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 SCAMP1O15126 338 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 KLK10O43240 276 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 HSF2BPO75031 334 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 USP12O75317 370 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 PIAS2O75928 621 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 C1QL1O75973 258 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 GNA14O95837 355 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 TRUB2O95900 331 aaKnown RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 DRD3P35462 400 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 RABIFP47224 123 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 FMO5P49326 533 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 RGS7P49802 495 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 SGSHP51688 502 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 NDUFA8P51970 172 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 KCNC4Q03721 635 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 SLC20A2Q08357 652 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 EIF3IQ13347 325 aaKnown RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 DLG2Q15700 870 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 FOXD4L6Q3SYB3 417 aaPredicted RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 CBWD6Q4V339 395 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 FSCBQ5H9T9 825 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 CBWD3Q5JTY5 395 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 EFHC1Q5JVL4 640 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 CBWD5Q5RIA9 395 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 ZNF658Q5TYW1 1059 aaPredicted RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 AGBL4Q5VU57 503 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 FOXD4L5Q5VV16 416 aaPredicted RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 CDCP2Q5VXM1 449 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 RAP1GAP2Q684P5 730 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 NADSYN1Q6IA69 706 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 KIAA1161Q6NSJ0 714 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 FOXR2Q6PJQ5 311 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 FOXD4L3Q6VB84 417 aaPredicted RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 HORMAD1Q86X24 394 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 SPATS2Q86XZ4 545 aaKnown RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 CFAP52Q8N1V2 620 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 UBR7Q8N806 425 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 TMEM145Q8NBT3 493 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 FRS2Q8WU20 508 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 FOXD4L4Q8WXT5 416 aaPredicted RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 NDRG1Q92597 394 aaKnown RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 NAT6Q93015 286 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 SLC35C1Q96A29 364 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 CRELD1Q96HD1 420 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 RPL10LQ96L21 214 aaKnown RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 RPRD1AQ96P16 312 aaPredicted RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 CALN1Q9BXU9 219 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 HDAC8Q9BY41 377 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 MIS12Q9H081 205 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 NUCKS1Q9H1E3 243 aaKnown RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 FAM204AQ9H8W3 233 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 IPO11Q9UI26 975 aaKnown RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 SALL4Q9UJQ4 1053 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 HS3ST2Q9Y278 367 aa6.46□□□□□ -1.38
CUX1-220ENST00000607092 HEMK1Q9Y5R4 338 aaPredicted RBP6.46□□□□□ -1.38
CUX1-220ENST00000607092 TMEM131Q92545 1883 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 UNC79Q9P2D8 2635 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 A0A1W2PQU0 124 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 BICDL2A1A5D9 508 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 M0QYT0 321 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 CBX4O00257 560 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 KPNA3O00505 521 aaPredicted RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 TRIM38O00635 465 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 FPGTO14772 594 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 RTN2O75298 545 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 CSO75390 466 aaKnown RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 ZNF202O95125 648 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 PCDH8O95206 1070 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 FGFR1OPO95684 399 aaKnown RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 F9P00740 461 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 PRB1P04280 392 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 PDGFRAP16234 1089 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 MAT2AP31153 395 aaKnown RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 CHRNA3P32297 505 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 ETFBP38117 255 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 CTSOP43234 321 aaPredicted RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 GPD2P43304 727 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 BLKP51451 505 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 CDH4P55283 916 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 GEMIN4P57678 1058 aaKnown RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 PPP2CBP62714 309 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 RPS21P63220 83 aaKnown RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 PPP2CAP67775 309 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 CNTN1Q12860 1018 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 LRMPQ12912 555 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 SGCGQ13326 291 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 PTK2BQ14289 1009 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 ISXQ2M1V0 245 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 CCDC40Q4G0X9 1142 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 ZC3H12AQ5D1E8 599 aaKnown RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 BRMS1LQ5PSV4 323 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 RETSATQ6NUM9 610 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 LRRC31Q6UY01 552 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 KYAT3Q6YP21 454 aaKnown RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 CCDC81Q6ZN84 652 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms