RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	NSUN3	Q9H649	340 aa	Known RBP	11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	PIDD1	Q9HB75	910 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	ARHGEF3	Q9NR81	526 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	TXLNG	Q9NUQ3	528 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	SMPD4	Q9NXE4	827 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	ZMYM5	Q9UJ78	669 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	VANGL2	Q9ULK5	521 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	CPQ	Q9Y646	472 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	BCLAF3	A2AJT9	711 aa	Known RBP	11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	HACD1	B0YJ81	288 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	MFSD11	O43934	449 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	ZNF189	O75820	626 aa	Predicted RBP	11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	PAPLN	O95428	1278 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	LATS1	O95835	1130 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	IL1B	P01584	269 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	IRF1	P10914	325 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	ALAD	P13716	330 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	NQO1	P15559	274 aa	Known RBP	11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	GJA1	P17302	382 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	CA4	P22748	312 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	FOXN2	P32314	431 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	NCALD	P61601	193 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	PDK1	Q15118	436 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	GPR158	Q5T848	1215 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	CGB2	Q6NT52	195 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	FBXL22	Q6P050	247 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	GRASP	Q7Z6J2	395 aa	Predicted RBP	11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	PRUNE1	Q86TP1	453 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	CHSY1	Q86X52	802 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	CDKL3	Q8IVW4	592 aa	Predicted RBP	11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	ZNF683	Q8IZ20	524 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	LRRC8C	Q8TDW0	803 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	SMG7	Q92540	1137 aa	Known RBP	11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	DDX50	Q9BQ39	737 aa	Known RBP	11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	SLC46A2	Q9BY10	475 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	ZYG11B	Q9C0D3	744 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	ZNF576	Q9H609	170 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	TASP1	Q9H6P5	420 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	SFXN1	Q9H9B4	322 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	NEU3	Q9UQ49	428 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	MFHAS1	Q9Y4C4	1052 aa		11.95	□□□□□ -0.5
VRK3-223	ENST00000601341	MTCL1	Q9Y4B5	1905 aa	Known RBP	11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	PDE4DIP	Q5VU43	2346 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	IGLV3-10	A0A075B6K4	115 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	IQANK1	A0A1B0GTG1	560 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341		A0A1W2PPC1	479 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	DRGX	A6NNA5	263 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	WASH4P	A8MWX3	477 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341		F5H5T6	163 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	TRDMT1	O14717	391 aa	Known RBP	11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	PPP1R12A	O14974	1030 aa	Predicted RBP	11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	UNC5C	O95185	931 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	MAP3K6	O95382	1288 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	KLKB1	P03952	638 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	RHOQ	P17081	205 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	MX2	P20592	715 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	TACR2	P21452	398 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	AVPR1A	P37288	418 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	MSH2	P43246	934 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	GDF10	P55107	478 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	KCNJ11	Q14654	390 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	SLC45A4	Q5BKX6	768 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	ARTN	Q5T4W7	220 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	ADGRF1	Q5T601	910 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	NADSYN1	Q6IA69	706 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	CCDC91	Q7Z6B0	441 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	PALM2	Q8IXS6	379 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	FITM2	Q8N6M3	262 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	RTL3	Q8N8U3	475 aa	Known RBP	11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	FBXO36	Q8NEA4	188 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	VN1R2	Q8NFZ6	395 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	MZB1	Q8WU39	189 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	TFB1M	Q8WVM0	346 aa	Known RBP	11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	TCEAL4	Q96EI5	215 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	RPRD1A	Q96P16	312 aa	Predicted RBP	11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	OLFM3	Q96PB7	478 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	PAFAH2	Q99487	392 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	FERMT1	Q9BQL6	677 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	BRD8	Q9H0E9	1235 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	IGFLR1	Q9H665	355 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	ECT2	Q9H8V3	914 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	MPP6	Q9NZW5	540 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	ZNF180	Q9UJW8	692 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	STOML2	Q9UJZ1	356 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	LSM7	Q9UK45	103 aa	Known RBP	11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	AGO1	Q9UL18	857 aa	Known RBP	11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	PHTF1	Q9UMS5	762 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	TEX264	Q9Y6I9	313 aa		11.94	□□□□□ -0.5
VRK3-223	ENST00000601341	TRANK1	O15050	2925 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	MOSPD3	O75425	235 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	ATP6V1G2	O95670	118 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	RPA3	P35244	121 aa	Predicted RBP	11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	RASSF2	P50749	326 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	TEAD2	Q15562	447 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	SLC5A9	Q2M3M2	681 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	PARP6	Q2NL67	630 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	LRIT3	Q3SXY7	679 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	PREPL	Q4J6C6	727 aa	Predicted RBP	11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	FAM133B	Q5BKY9	247 aa	Known RBP	11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	PRSS36	Q5K4E3	855 aa		11.93	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms