RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 TRPM2O94759 1503 aa4.49□□□□□ -1.69
SMCHD1-208ENST00000583344 SPHKAPQ2M3C7 1700 aa4.49□□□□□ -1.69
SMCHD1-208ENST00000583344 VIRMAQ69YN4 1812 aaKnown RBP4.49□□□□□ -1.69
SMCHD1-208ENST00000583344 TTC37Q6PGP7 1564 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 ARHGAP5Q13017 1502 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 ARAP3Q8WWN8 1544 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 SYCP2Q9BX26 1530 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 LOC105369274A0A096LPK9 316 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 LOC102723532A0A0G2JNH3 316 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 FSD2A1L4K1 749 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 GAGE12JA6NER3 117 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 SPRY3O43610 288 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 ALDOAP04075 364 aaKnown RBP4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 IGFBP2P18065 325 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 PDLIM4P50479 330 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 RASSF2P50749 326 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 GAS1P54826 345 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 POLE2P56282 527 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 ABATP80404 500 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 GRM4Q14833 912 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 ALG10Q5BKT4 473 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 ALG10BQ5I7T1 473 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 FBXO38Q6PIJ6 1188 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 OR4N4Q8N0Y3 316 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 CADM3Q8N126 398 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 ENGASEQ8NFI3 743 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 WFIKKN2Q8TEU8 576 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 RMI1Q9H9A7 625 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 ZNF304Q9HCX3 659 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 PLEKHB1Q9UF11 243 aaPredicted RBP4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 ISY1Q9ULR0 285 aaKnown RBP4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 TNFSF13BQ9Y275 285 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 PCDHGB1Q9Y5G3 927 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 CEP152O94986 1710 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 ERVK-7P63135 1459 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 VWDEQ8N2E2 1590 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 MYOM1P52179 1685 aa4.48□□□□□ -1.69
SMCHD1-208ENST00000583344 CENPJQ9HC77 1338 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 CLEC18AA5D8T8 446 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 IGKV3-20P01619 116 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 ARSBP15848 533 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 FOXL2P58012 376 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 SELENOVP59797 346 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 HLTFQ14527 1009 aaKnown RBP eCLIP4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 C9orf50Q5SZB4 431 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 SLC25A41Q8N5S1 370 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 CLEC18CQ8NCF0 446 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 GABPB2Q8TAK5 448 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 ADAMTS14Q8WXS8 1223 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 WDR77Q9BQA1 342 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 EIF2AQ9BY44 585 aaKnown RBP4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 POLDIP3Q9BY77 421 aaKnown RBP4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 TM6SF1Q9BZW5 370 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 UBA5Q9GZZ9 404 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 C6orf106Q9H6K1 298 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 UPF2Q9HAU5 1272 aaKnown RBP4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 STARD7Q9NQZ5 370 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 CHMP5Q9NZZ3 219 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 RAB21Q9UL25 225 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 FZD10Q9ULW2 581 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 UHRF1BP1LA0JNW5 1464 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 MYOM2P54296 1465 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 NLRP1Q9C000 1473 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 NRXN1Q9ULB1 1477 aa4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 KDM5AP29375 1690 aaKnown RBP4.47□□□□□ -1.69
SMCHD1-208ENST00000583344 DEPDC5O75140 1603 aa4.46□□□□□ -1.69
SMCHD1-208ENST00000583344 MYO3AQ8NEV4 1616 aa4.46□□□□□ -1.69
SMCHD1-208ENST00000583344 TET3O43151 1660 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 SPATA31D1Q6ZQQ2 1576 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 I6L893 689 aaPredicted RBP4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 SH3BP5O60239 455 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 CAMTA2O94983 1202 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 LDHAP00338 332 aaKnown RBP4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 DDIT3P35638 169 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 COMPP49747 757 aaPredicted RBP4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 FAM3BP58499 235 aaPredicted RBP4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 RPL15P61313 204 aaKnown RBP4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 TLE3Q04726 772 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 IFIT5Q13325 482 aaKnown RBP4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 SHBQ15464 509 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 FNBP1LQ5T0N5 605 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 SYCP2LQ5T4T6 812 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 PRSS57Q6UWY2 283 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 KSR2Q6VAB6 950 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 FAM83HQ6ZRV2 1179 aaPredicted RBP4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 ZNF329Q86UD4 541 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 TCP11L2Q8N4U5 519 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 SAMD3Q8N6K7 520 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 SNX21Q969T3 373 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 ARNT2Q9HBZ2 717 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 PNRC2Q9NPJ4 139 aaKnown RBP4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 HELLSQ9NRZ9 838 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 TRPC5Q9UL62 973 aaPredicted RBP4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 CA14Q9ULX7 337 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 MAP3K4Q9Y6R4 1608 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 IL16Q14005 1332 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 RPGRIP1LQ68CZ1 1315 aa4.46□□□□□ -1.7
SMCHD1-208ENST00000583344 PPRC1Q5VV67 1664 aaKnown RBP4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 SETBP1Q9Y6X0 1596 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms