RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 WASHC5Q12768 1159 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 TEX44Q53QW1 395 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 INO80DQ53TQ3 878 aaPredicted RBP10.95□□□□□ -0.66
SS18-213ENST00000579640 MARC1Q5VT66 337 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 ITPRIPL1Q6GPH6 555 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 ASTLQ6HA08 431 aaPredicted RBP10.95□□□□□ -0.66
SS18-213ENST00000579640 B4GALNT4Q76KP1 1039 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 ADHFE1Q8IWW8 467 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 SUGP1Q8IWZ8 645 aaKnown RBP10.95□□□□□ -0.66
SS18-213ENST00000579640 APCDD1Q8J025 514 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 TEX26Q8N6G2 289 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 LRRN4Q8WUT4 740 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 LRRC45Q96CN5 670 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 ERP44Q9BS26 406 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 SEPT10Q9P0V9 454 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 KLHL8Q9P2G9 620 aaPredicted RBP10.95□□□□□ -0.66
SS18-213ENST00000579640 UBA2Q9UBT2 640 aaPredicted RBP10.95□□□□□ -0.66
SS18-213ENST00000579640 VPS51Q9UID3 782 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 INTS6Q9UL03 887 aaKnown RBP10.95□□□□□ -0.66
SS18-213ENST00000579640 COL4A3Q01955 1670 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 SZT2Q5T011 3432 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.95□□□□□ -0.66
SS18-213ENST00000579640 KCNK1O00180 336 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 TIMM44O43615 452 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 NEBLO76041 1014 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 HEXIM1O94992 359 aaKnown RBP10.95□□□□□ -0.66
SS18-213ENST00000579640 PEX11BO96011 259 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 JCHAINP01591 159 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 ASLP04424 464 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 HSPA9P38646 679 aaKnown RBP10.95□□□□□ -0.66
SS18-213ENST00000579640 ARF5P84085 180 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 LBRQ14739 615 aaKnown RBP10.95□□□□□ -0.66
SS18-213ENST00000579640 EIF4HQ15056 248 aaKnown RBP10.95□□□□□ -0.66
SS18-213ENST00000579640 FUT11Q495W5 492 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 ANKRD20A2Q5SQ80 823 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 ANKRD20A1Q5TYW2 823 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 ANKRD20A3Q5VUR7 823 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 ARHGEF18Q6ZSZ5 1173 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 NUDT18Q6ZVK8 323 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 C12orf40Q86WS4 652 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 BBOF1Q8ND07 529 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 MYRIPQ8NFW9 859 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 TTC17Q96AE7 1141 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 MSANTD3Q96H12 275 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 TEKT5Q96M29 485 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 PPP1R2P1Q96PQ5 205 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 C8orf33Q9H7E9 229 aaPredicted RBP10.95□□□□□ -0.66
SS18-213ENST00000579640 PRDM6Q9NQX0 595 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 SEPT3Q9UH03 358 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 ASIC3Q9UHC3 531 aa10.95□□□□□ -0.66
SS18-213ENST00000579640 KIAA1549LQ6ZVL6 1849 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 SNAP91O60641 907 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 ATP5BP06576 529 aaKnown RBP10.94□□□□□ -0.66
SS18-213ENST00000579640 TUBBP07437 444 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 RHOXF2BP0C7M4 288 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 GLULP15104 373 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 POLR2EP19388 210 aaKnown RBP10.94□□□□□ -0.66
SS18-213ENST00000579640 RPL22P35268 128 aaKnown RBP10.94□□□□□ -0.66
SS18-213ENST00000579640 FDFT1P37268 417 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 OPRD1P41143 372 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 MMP13P45452 471 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 VASPP50552 380 aaPredicted RBP10.94□□□□□ -0.66
SS18-213ENST00000579640 DRG2P55039 364 aaKnown RBP10.94□□□□□ -0.66
SS18-213ENST00000579640 ZBTB17Q13105 803 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 TDGQ13569 410 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 E2F5Q15329 346 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 MBLAC2Q68D91 279 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 PID1Q7Z2X4 250 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 ADIPOR2Q86V24 386 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 ZNF567Q8N184 647 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 CCDC110Q8TBZ0 833 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 PNKPQ96T60 521 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 RHOXF2Q9BQY4 288 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 TRIM51Q9BSJ1 452 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 SLC2A4RGQ9NR83 387 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 RBM22Q9NW64 420 aaKnown RBP eCLIP10.94□□□□□ -0.663e-7■■■■■ 29.6
SS18-213ENST00000579640 SLC25A13Q9UJS0 675 aa10.94□□□□□ -0.66
SS18-213ENST00000579640 TICRRQ7Z2Z1 1910 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 BHMG1C9JSJ3 638 aaPredicted RBP10.93□□□□□ -0.66
SS18-213ENST00000579640 SRFP11831 508 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 ETS1P14921 441 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 GLDCP23378 1020 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 MCM3P25205 808 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 ADCY8P40145 1251 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 SLC6A11P48066 632 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 SERPINH1P50454 418 aaKnown RBP10.93□□□□□ -0.66
SS18-213ENST00000579640 MRPS25P82663 173 aaKnown RBP10.93□□□□□ -0.66
SS18-213ENST00000579640 SLC7A5Q01650 507 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 GUCY2DQ02846 1103 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 SLC10A7Q0GE19 358 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 GPS1Q13098 491 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 ZNF235Q14590 738 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 TRIP13Q15645 432 aaPredicted RBP10.93□□□□□ -0.66
SS18-213ENST00000579640 GEN1Q17RS7 908 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 PARP6Q2NL67 630 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 DUPD1Q68J44 220 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 PCGF5Q86SE9 256 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 RALGPS2Q86X27 583 aaPredicted RBP10.93□□□□□ -0.66
SS18-213ENST00000579640 IFT20Q8IY31 132 aa10.93□□□□□ -0.66
SS18-213ENST00000579640 PHTF2Q8N3S3 785 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms