RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 C9orf106Q8NAJ2 232 aa5.7□□□□□ -1.5
NUP88-213ENST00000576862 FAR1Q8WVX9 515 aa5.7□□□□□ -1.5
NUP88-213ENST00000576862 RNFT2Q96EX2 444 aa5.7□□□□□ -1.5
NUP88-213ENST00000576862 TWNKQ96RR1 684 aa5.7□□□□□ -1.5
NUP88-213ENST00000576862 WDR77Q9BQA1 342 aaPredicted RBP5.7□□□□□ -1.5
NUP88-213ENST00000576862 PYM1Q9BRP8 204 aaKnown RBP5.7□□□□□ -1.5
NUP88-213ENST00000576862 B3GNT4Q9C0J1 378 aa5.7□□□□□ -1.5
NUP88-213ENST00000576862 SIRT3Q9NTG7 399 aaPredicted RBP5.7□□□□□ -1.5
NUP88-213ENST00000576862 PLEKHB1Q9UF11 243 aaPredicted RBP5.7□□□□□ -1.5
NUP88-213ENST00000576862 DGKBQ9Y6T7 804 aa5.7□□□□□ -1.5
NUP88-213ENST00000576862 TARSL2A2RTX5 802 aaKnown RBP5.69□□□□□ -1.5
NUP88-213ENST00000576862 VWA3AA6NCI4 1184 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 GAGE12JA6NER3 117 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 H0YGN5 161 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 CKMT1AP12532 417 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 UNGP13051 313 aaPredicted RBP5.69□□□□□ -1.5
NUP88-213ENST00000576862 P2RX3P56373 397 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 IL13RA2Q14627 380 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 WASHC2DQ5SRD0 308 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 TBC1D9BQ66K14 1250 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 KRTAP5-3Q6L8H2 238 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 TMEM71Q6P5X7 295 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 PARM1Q6UWI2 310 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 FAM185AQ8N0U4 392 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 DPP10Q8N608 796 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 LRRC57Q8N9N7 239 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 ENGASEQ8NFI3 743 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 NSMCE1Q8WV22 266 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 LPAR1Q92633 364 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 NOD2Q9HC29 1040 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 SLC4A4Q9Y6R1 1079 aa5.69□□□□□ -1.5
NUP88-213ENST00000576862 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.68□□□□□ -1.5
NUP88-213ENST00000576862 TMCC1O94876 653 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 OAZ2O95190 189 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 TNNT1P13805 278 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 HNF1BP35680 557 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 PTPN9P43378 593 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 RASSF2P50749 326 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 POLGP54098 1239 aaPredicted RBP5.68□□□□□ -1.5
NUP88-213ENST00000576862 FOXG1P55316 489 aaPredicted RBP5.68□□□□□ -1.5
NUP88-213ENST00000576862 NAPEPLDQ6IQ20 393 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 GJB7Q6PEY0 223 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 C9orf47Q6ZRZ4 202 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 SLC16A12Q6ZSM3 486 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 WDR5BQ86VZ2 330 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 CPOQ8IVL8 374 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 ANKRD44Q8N8A2 993 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 SETD9Q8NE22 299 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 MORC4Q8TE76 937 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 ASB5Q8WWX0 329 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 NCSTNQ92542 709 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 URB1-AS1Q96HZ7 61 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 IFT27Q9BW83 186 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 ISCUQ9H1K1 167 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 LUZP4Q9P127 313 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 NLKQ9UBE8 527 aa5.68□□□□□ -1.5
NUP88-213ENST00000576862 MROH2BQ7Z745 1585 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 BICRAQ9NZM4 1560 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 HSD3B1P14060 373 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 CPA1P15085 419 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 SCP2P22307 547 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 SELENOVP59797 346 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 ANKRD1Q15327 319 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 DUSP6Q16828 381 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 CTU1Q7Z7A3 348 aaKnown RBP5.67□□□□□ -1.5
NUP88-213ENST00000576862 USP38Q8NB14 1042 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 HERVK_113Q902F9 699 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 TRIM63Q969Q1 353 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 GCC1Q96CN9 775 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 ZSCAN31Q96LW9 406 aaPredicted RBP5.67□□□□□ -1.5
NUP88-213ENST00000576862 TEFMQ96QE5 360 aaKnown RBP5.67□□□□□ -1.5
NUP88-213ENST00000576862 REEP2Q9BRK0 252 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 CXorf56Q9H5V9 222 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 STN1Q9H668 368 aaKnown RBP5.67□□□□□ -1.5
NUP88-213ENST00000576862 CDH22Q9UJ99 828 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 RAP2CQ9Y3L5 183 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 TTC3P53804 2025 aa5.67□□□□□ -1.5
NUP88-213ENST00000576862 OR6C68A6NDL8 312 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 FAM90A7PA6NKC0 464 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 FAM90A22PA8MWA6 464 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 FAM90A12PA8MX19 464 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 FAM90A23PA8MXZ1 464 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 EIF3FO00303 357 aaPredicted RBP5.66□□□□□ -1.5
NUP88-213ENST00000576862 TNFRSF13BO14836 293 aaPredicted RBP5.66□□□□□ -1.5
NUP88-213ENST00000576862 KLK10O43240 276 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 EIF3JO75822 258 aaKnown RBP5.66□□□□□ -1.5
NUP88-213ENST00000576862 CHRNB2P17787 502 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 CD72P21854 359 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 CCR5P51681 352 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 TMPRSS3P57727 454 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 SLC12A1Q13621 1099 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 RPE65Q16518 533 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 FBXO43Q4G163 708 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 LCE1AQ5T7P2 110 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 MAP3K21Q5TCX8 1036 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 DAB2IPQ5VWQ8 1189 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 TMEM268Q5VZI3 342 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 ZNF549Q6P9A3 640 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 ANKRD18AQ8IVF6 992 aa5.66□□□□□ -1.5
NUP88-213ENST00000576862 HORMAD2Q8N7B1 307 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms