RNA–Protein interactions for RNA: ENST00000573600.5

CTDNEP1-208, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CTDNEP1, Length 1,724 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-208ENST00000573600 ZFRQ96KR1 1074 aaKnown RBP29.66■■■□□ 2.34
CTDNEP1-208ENST00000573600 TRABDQ9H4I3 376 aa29.66■■■□□ 2.34
CTDNEP1-208ENST00000573600 KCNK9Q9NPC2 374 aa29.66■■■□□ 2.34
CTDNEP1-208ENST00000573600 TLR9Q9NR96 1032 aa29.66■■■□□ 2.34
CTDNEP1-208ENST00000573600 ZNF180Q9UJW8 692 aa29.66■■■□□ 2.34
CTDNEP1-208ENST00000573600 CHD5Q8TDI0 1954 aa29.66■■■□□ 2.34
CTDNEP1-208ENST00000573600 TMEM120BA0PK00 339 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 LINC01553A4QN01 128 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 FAM159BA6NKW6 160 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 USP12O75317 370 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 POLBP06746 335 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 SMAD3P84022 425 aaKnown RBP29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 TMC8Q8IU68 726 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 CTAGE3PQ8IX95 158 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 LRRC3Q9BY71 257 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 SLC25A51Q9H1U9 297 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 PIH1D1Q9NWS0 290 aaKnown RBP29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 UBP1Q9NZI7 540 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 CREB1P16220 341 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 CDC25CP30307 473 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 CRADDP78560 199 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 SPANXN3Q5MJ09 141 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 TXNDC8Q6A555 127 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 PPM1NQ8N819 430 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 ARL14EPQ8N8R7 260 aaPredicted RBP29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 PABPC5Q96DU9 382 aaKnown RBP29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 PRICKLE1Q96MT3 831 aaPredicted RBP29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 GCNAQ96QF7 691 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 SMC6Q96SB8 1091 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 TBL1YQ9BQ87 522 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 IL22Q9GZX6 179 aa29.65■■■□□ 2.34
CTDNEP1-208ENST00000573600 FOXO6A8MYZ6 492 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 C5orf67F2Z3F1 127 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 C1RP00736 705 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 PFKLP17858 780 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 MPP3Q13368 585 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 OLIG2Q13516 323 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 LGSNQ5TDP6 509 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 ZNF449Q6P9G9 518 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 GAREM2Q75VX8 874 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 SPATA22Q8NHS9 363 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 ZNF599Q96NL3 588 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 CYP2S1Q96SQ9 504 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 EPN3Q9H201 632 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 SMPD4Q9NXE4 827 aa29.64■■■□□ 2.34
CTDNEP1-208ENST00000573600 A0A1B0GVM2 712 aa29.63■■■□□ 2.33
CTDNEP1-208ENST00000573600 TCAF2A6NFQ2 919 aa29.63■■■□□ 2.33
CTDNEP1-208ENST00000573600 HIDE1A8MVS5 230 aa29.63■■■□□ 2.33
CTDNEP1-208ENST00000573600 PRAMEF11O60813 436 aa29.63■■■□□ 2.33
CTDNEP1-208ENST00000573600 RB1P06400 928 aa29.63■■■□□ 2.33
CTDNEP1-208ENST00000573600 GNA12Q03113 381 aa29.63■■■□□ 2.33
CTDNEP1-208ENST00000573600 CRYMQ14894 314 aa29.63■■■□□ 2.33
CTDNEP1-208ENST00000573600 PPM1LQ5SGD2 360 aa29.63■■■□□ 2.33
CTDNEP1-208ENST00000573600 CDKL2Q92772 493 aa29.63■■■□□ 2.33
CTDNEP1-208ENST00000573600 SSU72Q9NP77 194 aaKnown RBP29.63■■■□□ 2.33
CTDNEP1-208ENST00000573600 H3BNC9 293 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 PIAS1O75925 651 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 SLC18A1P54219 525 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 RPS24P62847 133 aaKnown RBP29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 SLC10A7Q0GE19 358 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 NAB1Q13506 487 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 SETD3Q86TU7 594 aaPredicted RBP29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 HS6ST3Q8IZP7 471 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 CNPY4Q8N129 248 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 MZB1Q8WU39 189 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 WBP2Q969T9 261 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 SLC22A12Q96S37 553 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 NT5MQ9NPB1 228 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 SMG5Q9UPR3 1016 aaKnown RBP29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 CPQQ9Y646 472 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 PRPF4O43172 522 aaKnown RBP eCLIP29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 MT-CYBP00156 380 aaPredicted RBP29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 GBP2P32456 591 aaPredicted RBP29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 ACVRL1P37023 503 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 CLCN4P51793 760 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 PPARDQ03181 441 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 ZNF177Q13360 481 aaPredicted RBP29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 FRG1Q14331 258 aaKnown RBP29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 TMCO4Q5TGY1 634 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 TRMT10BQ6PF06 316 aaKnown RBP29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 ATXN2LQ8WWM7 1075 aaKnown RBP29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 TRIM56Q9BRZ2 755 aaKnown RBP29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 C17orf80Q9BSJ5 609 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 ASAH2Q9NR71 780 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 VPS45Q9NRW7 570 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 HAUS2Q9NVX0 235 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 NKIRAS1Q9NYS0 192 aa29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 LSM7Q9UK45 103 aaKnown RBP29.62■■■□□ 2.33
CTDNEP1-208ENST00000573600 ILVBLA1L0T0 632 aa29.61■■■□□ 2.33
CTDNEP1-208ENST00000573600 CXorf49A8MYA2 514 aaPredicted RBP29.61■■■□□ 2.33
CTDNEP1-208ENST00000573600 DNAJB1P25685 340 aa29.61■■■□□ 2.33
CTDNEP1-208ENST00000573600 SLC7A9P82251 487 aa29.61■■■□□ 2.33
CTDNEP1-208ENST00000573600 CYP4F8P98187 520 aa29.61■■■□□ 2.33
CTDNEP1-208ENST00000573600 LBRQ14739 615 aaKnown RBP29.61■■■□□ 2.33
CTDNEP1-208ENST00000573600 CCDC117Q8IWD4 279 aaPredicted RBP29.61■■■□□ 2.33
CTDNEP1-208ENST00000573600 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP29.61■■■□□ 2.33
CTDNEP1-208ENST00000573600 IPMKQ8NFU5 416 aa29.61■■■□□ 2.33
CTDNEP1-208ENST00000573600 IMP4Q96G21 291 aaKnown RBP29.61■■■□□ 2.33
CTDNEP1-208ENST00000573600 APOL2Q9BQE5 337 aa29.61■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms