RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 AASDHPPTQ9NRN7 309 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 SMAD6O43541 496 aaKnown RBP21.21■□□□□ 0.99
CLN3-219ENST00000565778 PLEKP08567 350 aaPredicted RBP21.21■□□□□ 0.99
CLN3-219ENST00000565778 CHRNA3P32297 505 aa21.21■□□□□ 0.99
CLN3-219ENST00000565778 RECQLP46063 649 aaPredicted RBP21.21■□□□□ 0.99
CLN3-219ENST00000565778 CLCN6P51797 869 aa21.21■□□□□ 0.99
CLN3-219ENST00000565778 HDAC4P56524 1084 aa21.21■□□□□ 0.99
CLN3-219ENST00000565778 GSCP56915 257 aaPredicted RBP21.21■□□□□ 0.99
CLN3-219ENST00000565778 GNA12Q03113 381 aa21.21■□□□□ 0.99
CLN3-219ENST00000565778 SLC20A2Q08357 652 aa21.21■□□□□ 0.99
CLN3-219ENST00000565778 CNTN1Q12860 1018 aa21.21■□□□□ 0.99
CLN3-219ENST00000565778 DNAJC24Q6P3W2 148 aa21.21■□□□□ 0.99
CLN3-219ENST00000565778 SCYL2Q6P3W7 929 aa21.21■□□□□ 0.99
CLN3-219ENST00000565778 MON1BQ7L1V2 547 aa21.21■□□□□ 0.99
CLN3-219ENST00000565778 PRPF39Q86UA1 669 aaKnown RBP21.21■□□□□ 0.99
CLN3-219ENST00000565778 SLC6A18Q96N87 628 aa21.21■□□□□ 0.99
CLN3-219ENST00000565778 MAGEB5Q9BZ81 275 aa21.21■□□□□ 0.99
CLN3-219ENST00000565778 KDM4CQ9H3R0 1056 aa21.21■□□□□ 0.99
CLN3-219ENST00000565778 TPX2Q9ULW0 747 aaKnown RBP21.21■□□□□ 0.99
CLN3-219ENST00000565778 FAM72CH0Y354 149 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 VILLO15195 856 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 SLC7A4O43246 635 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 RHOQP17081 205 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 NRG1Q02297 640 aaPredicted RBP21.2■□□□□ 0.98
CLN3-219ENST00000565778 KCNT1Q5JUK3 1230 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 FAM72AQ5TYM5 149 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 FAM72DQ6L9T8 149 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 SLFN11Q7Z7L1 901 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 FAM72BQ86X60 149 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 CCDC185Q8N715 623 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 OR2A12Q8NGT7 310 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 SERAC1Q96JX3 654 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 SCNM1Q9BWG6 230 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 TNKS2Q9H2K2 1166 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 ZNF212Q9UDV6 495 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 DNAI1Q9UI46 699 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 MYO6Q9UM54 1294 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 PCDHGB2Q9Y5G2 931 aa21.2■□□□□ 0.98
CLN3-219ENST00000565778 KPNA3O00505 521 aaPredicted RBP21.19■□□□□ 0.98
CLN3-219ENST00000565778 PLRG1O43660 514 aaKnown RBP21.19■□□□□ 0.98
CLN3-219ENST00000565778 SERPINC1P01008 464 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 CD38P28907 300 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 CTSKP43235 329 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 DNA2P51530 1060 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 CCDC15Q0P6D6 951 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 ARSIQ5FYB1 569 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 DCUN1D2Q6PH85 259 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 MCOLN2Q8IZK6 566 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 TMIEQ8NEW7 156 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 RHBDD1Q8TEB9 315 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 BAP1Q92560 729 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 TBC1D31Q96DN5 1066 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 NAP1L5Q96NT1 182 aaPredicted RBP21.19■□□□□ 0.98
CLN3-219ENST00000565778 RETREG1Q9H6L5 497 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 DYRK4Q9NR20 520 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 PCOLCE2Q9UKZ9 415 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 WASF3Q9UPY6 502 aa21.19■□□□□ 0.98
CLN3-219ENST00000565778 PCNX2A6NKB5 2137 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 LRRC53A6NM62 1247 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 TMCO5BA8MYB1 307 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 H0Y8X5 98 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 HYAL3O43820 417 aaPredicted RBP21.18■□□□□ 0.98
CLN3-219ENST00000565778 DFNA5O60443 496 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 ZMPSTE24O75844 475 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 LRIG2O94898 1065 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 TRIM16O95361 564 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 PRNPP04156 253 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 CTSLP07711 333 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 MAT2AP31153 395 aaKnown RBP21.18■□□□□ 0.98
CLN3-219ENST00000565778 ETFBP38117 255 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 ZNF143P52747 638 aaPredicted RBP21.18■□□□□ 0.98
CLN3-219ENST00000565778 RPL7AP62424 266 aaKnown RBP21.18■□□□□ 0.98
CLN3-219ENST00000565778 PPP2CBP62714 309 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 PPP2CAP67775 309 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 ASIC2Q16515 512 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 SLC45A4Q5BKX6 768 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 MANEALQ5VSG8 457 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 C22orf39Q6P5X5 142 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 DBX2Q6ZNG2 339 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 CHST14Q8NCH0 376 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 FAM131CQ96AQ9 280 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 MCEEQ96PE7 176 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 NDFIP2Q9NV92 336 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 IL36AQ9UHA7 158 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 HPCAL4Q9UM19 191 aa21.18■□□□□ 0.98
CLN3-219ENST00000565778 CACNA1EQ15878 2313 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 TCRBV5S1A1TA0A578 114 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 WNT9AO14904 365 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 FLRT2O43155 660 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 CCP110O43303 1012 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 WNT1P04628 370 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 DESP17661 470 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 ACVRL1P37023 503 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 MAPKAPK2P49137 400 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 SERPINH1P50454 418 aaKnown RBP21.17■□□□□ 0.98
CLN3-219ENST00000565778 IQCB1Q15051 598 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 ZNF423Q2M1K9 1284 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 PRAMEF14Q5SWL7 426 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 AGBL4Q5VU57 503 aa21.17■□□□□ 0.98
CLN3-219ENST00000565778 DPY19L3Q6ZPD9 716 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms