RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 UPK3BL2E5RIL1 263 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 H3BRJ5 948 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 SGK1O00141 431 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 FGF10O15520 208 aaPredicted RBP17.67■□□□□ 0.42
CLN3-217ENST00000565354 ALDH1A2O94788 518 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 PTMAP06454 111 aaKnown RBP17.67■□□□□ 0.42
CLN3-217ENST00000565354 DLDP09622 509 aaKnown RBP17.67■□□□□ 0.42
CLN3-217ENST00000565354 HNRNPLP14866 589 aaKnown RBP eCLIP17.67■□□□□ 0.42
CLN3-217ENST00000565354 ENGP17813 658 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 IL1R2P27930 398 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 NNMTP40261 264 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 ARL4AP40617 200 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 P2RY2P41231 377 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 MAPKAPK2P49137 400 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 VAV2P52735 878 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 ZNF135P52742 658 aaPredicted RBP17.67■□□□□ 0.42
CLN3-217ENST00000565354 SIM1P81133 766 aaPredicted RBP17.67■□□□□ 0.42
CLN3-217ENST00000565354 SULT2A1Q06520 285 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 ZNF234Q14588 700 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 GSE1Q14687 1217 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 STARD3Q14849 445 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 CA9Q16790 459 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 ODF2Q5BJF6 829 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 TMEM92Q6UXU6 159 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 ZNF354CQ86Y25 554 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 APCDD1Q8J025 514 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 TEKT4Q8WW24 435 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 RLN3Q8WXF3 142 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 SPACA7Q96KW9 195 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 KCTD15Q96SI1 283 aaPredicted RBP17.67■□□□□ 0.42
CLN3-217ENST00000565354 ACOX2Q99424 681 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 DESI2Q9BSY9 194 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 SPON2Q9BUD6 331 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 TMEM74BQ9NUR3 256 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 TMEM248Q9NWD8 314 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 DONSONQ9NYP3 566 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 DNAI1Q9UI46 699 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 SLC25A13Q9UJS0 675 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 TFR2Q9UP52 801 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 TBC1D30Q9Y2I9 924 aa17.67■□□□□ 0.42
CLN3-217ENST00000565354 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 A0A0A6YYK5 440 aaPredicted RBP17.66■□□□□ 0.42
CLN3-217ENST00000565354 SPAARA0A1B0GVQ0 90 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 ARHGAP6O43182 974 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 MAP3K13O43283 966 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 SPOPO43791 374 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 SYNCRIPO60506 623 aaKnown RBP17.66■□□□□ 0.42
CLN3-217ENST00000565354 KRT7P08729 469 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 RARAP10276 462 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 TCF4P15884 667 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 IL12RB1P42701 662 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 PTGER3P43115 390 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 SLC25A11Q02978 314 aaKnown RBP17.66■□□□□ 0.42
CLN3-217ENST00000565354 SEMA3BQ13214 749 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 SLC23A3Q6PIS1 610 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 ZNF783Q6ZMS7 281 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 ARMCX6Q7L4S7 300 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 LRRC8AQ8IWT6 810 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 TMEFF1Q8IYR6 380 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 TTC17Q96AE7 1141 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 LMLNQ96KR4 655 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 FEM1AQ9BSK4 669 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 BCCIPQ9P287 314 aaKnown RBP eCLIP17.66■□□□□ 0.42
CLN3-217ENST00000565354 INTS6Q9UL03 887 aaKnown RBP17.66■□□□□ 0.42
CLN3-217ENST00000565354 ACACAQ13085 2346 aa17.66■□□□□ 0.42
CLN3-217ENST00000565354 ILVBLA1L0T0 632 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 TAF4O00268 1085 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 BUB1O43683 1085 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 TRIM16O95361 564 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 EPHX1P07099 455 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 SRPRAP08240 638 aaKnown RBP17.65■□□□□ 0.42
CLN3-217ENST00000565354 TNNT1P13805 278 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 GOT1P17174 413 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 ETFBP38117 255 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 DPP6P42658 865 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 SLC1A1P43005 524 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 PLK1P53350 603 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 CDH6P55285 790 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 ECT2LQ008S8 904 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 GNA12Q03113 381 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 KIF5AQ12840 1032 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 TCEAL1Q15170 157 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 SPDYCQ5MJ68 293 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 RFX8Q6ZV50 586 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 CYP4V2Q6ZWL3 525 aaPredicted RBP17.65■□□□□ 0.42
CLN3-217ENST00000565354 PGBD3Q8N328 593 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 RTL3Q8N8U3 475 aaKnown RBP17.65■□□□□ 0.42
CLN3-217ENST00000565354 ERLEC1Q96DZ1 483 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 CALR3Q96L12 384 aaKnown RBP17.65■□□□□ 0.42
CLN3-217ENST00000565354 C2orf49Q9BVC5 232 aaPredicted RBP17.65■□□□□ 0.42
CLN3-217ENST00000565354 ATP13A1Q9HD20 1204 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 MBD1Q9UIS9 605 aaPredicted RBP17.65■□□□□ 0.42
CLN3-217ENST00000565354 HCN2Q9UL51 889 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 ERVW-1Q9UQF0 538 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 REXO2Q9Y3B8 237 aaKnown RBP17.65■□□□□ 0.42
CLN3-217ENST00000565354 RAD54BQ9Y620 910 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 LOC400499M0QZD8 3231 aa17.65■□□□□ 0.42
CLN3-217ENST00000565354 SETXQ7Z333 2677 aaKnown RBP17.64■□□□□ 0.41
CLN3-217ENST00000565354 TCRBV21S2A2A0A5A6 115 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 FAM221BA6H8Z2 402 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms