RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 INSIG1O15503 277 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 PJA2O43164 708 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 RPP40O75818 363 aaKnown RBP9.42□□□□□ -0.9
VPS35-206ENST00000565228 RNF8O76064 485 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 MAP3K6O95382 1288 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 ASLP04424 464 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 ATP5BP06576 529 aaKnown RBP9.42□□□□□ -0.9
VPS35-206ENST00000565228 MAN1A1P33908 653 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 DRD3P35462 400 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 PTGER3P43115 390 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 MAPKAPK2P49137 400 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 PAPOLAP51003 745 aaKnown RBP9.42□□□□□ -0.9
VPS35-206ENST00000565228 AIF1P55008 147 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 HADHBP55084 474 aaKnown RBP9.42□□□□□ -0.9
VPS35-206ENST00000565228 TPI1P60174 286 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 SERINC3Q13530 473 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 ACAP1Q15027 740 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 LLGL1Q15334 1064 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 CYTH1Q15438 398 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 CCDC6Q16204 474 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 POM121L1PQ3SYA9 428 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 PREPLQ4J6C6 727 aaPredicted RBP9.42□□□□□ -0.9
VPS35-206ENST00000565228 NCBP2-AS2Q69YL0 99 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 TRMT11Q7Z4G4 463 aaKnown RBP9.42□□□□□ -0.9
VPS35-206ENST00000565228 SLC41A1Q8IVJ1 513 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 OR2T3Q8NH03 318 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 TPCN2Q8NHX9 752 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 UCMAQ8WVF2 138 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 TEKT4Q8WW24 435 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 FAF2Q96CS3 445 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 ORAI3Q9BRQ5 295 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 FAM126AQ9BYI3 521 aaPredicted RBP9.42□□□□□ -0.9
VPS35-206ENST00000565228 RSPH9Q9H1X1 276 aaPredicted RBP9.42□□□□□ -0.9
VPS35-206ENST00000565228 ATP13A1Q9HD20 1204 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 POLMQ9NP87 494 aaPredicted RBP9.42□□□□□ -0.9
VPS35-206ENST00000565228 ALG6Q9Y672 507 aa9.42□□□□□ -0.9
VPS35-206ENST00000565228 LRRK1Q38SD2 2015 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 PLXNA2O75051 1894 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 GRID2IPA4D2P6 1211 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 MID1O15344 667 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 KDELR3O43731 214 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 MFSD11O43934 449 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 RAMP2O60895 175 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 IGLV3-19P01714 112 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 KDELR1P24390 212 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 ACSL1P33121 698 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 HCAR3P49019 387 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 SERPINH1P50454 418 aaKnown RBP9.41□□□□□ -0.9
VPS35-206ENST00000565228 TPMTP51580 245 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 CDH6P55285 790 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 MTA1Q13330 715 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 SIM2Q14190 667 aaPredicted RBP9.41□□□□□ -0.9
VPS35-206ENST00000565228 POLD3Q15054 466 aaPredicted RBP9.41□□□□□ -0.9
VPS35-206ENST00000565228 TAZQ16635 292 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 TSR1Q2NL82 804 aaKnown RBP9.41□□□□□ -0.9
VPS35-206ENST00000565228 BOLA3Q53S33 107 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 C6orf118Q5T5N4 469 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 ATXN7L2Q5T6C5 722 aaPredicted RBP9.41□□□□□ -0.9
VPS35-206ENST00000565228 PMS2CLQ68D20 193 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 AADACL2Q6P093 401 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 C22orf39Q6P5X5 142 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 KIAA1324Q6UXG2 1013 aaKnown RBP9.41□□□□□ -0.9
VPS35-206ENST00000565228 NPNTQ6UXI9 565 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 ZNF783Q6ZMS7 281 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 DPY19L3Q6ZPD9 716 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 B4GALNT4Q76KP1 1039 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 PSTKQ8IV42 348 aaKnown RBP9.41□□□□□ -0.9
VPS35-206ENST00000565228 MMAAQ8IVH4 418 aaKnown RBP9.41□□□□□ -0.9
VPS35-206ENST00000565228 LRRC8AQ8IWT6 810 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 RHOT2Q8IXI1 618 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 TMEFF1Q8IYR6 380 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 PGBD5Q8N414 524 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 LRRC57Q8N9N7 239 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 KDM1BQ8NB78 822 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 OR6K2Q8NGY2 324 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 FAM131CQ96AQ9 280 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 ARRDC3Q96B67 414 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 ZNF830Q96NB3 372 aaPredicted RBP9.41□□□□□ -0.9
VPS35-206ENST00000565228 EPAS1Q99814 870 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 MAGEH1Q9H213 219 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 CAAP1Q9H8G2 361 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 EBF2Q9HAK2 575 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 PRDM16Q9HAZ2 1276 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 ITM2CQ9NQX7 267 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 RXFP3Q9NSD7 469 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 TMEM74BQ9NUR3 256 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 TMEM51Q9NW97 253 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 WSB2Q9NYS7 404 aaPredicted RBP9.41□□□□□ -0.9
VPS35-206ENST00000565228 LHX3Q9UBR4 397 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 PPM1HQ9ULR3 514 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 PLA2G4CQ9UP65 541 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 SMG5Q9UPR3 1016 aaKnown RBP9.41□□□□□ -0.9
VPS35-206ENST00000565228 ADGRG1Q9Y653 693 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 CAPN6Q9Y6Q1 641 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 WASF2Q9Y6W5 498 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 PCDH15Q96QU1 1955 aa9.41□□□□□ -0.9
VPS35-206ENST00000565228 ATXN2Q99700 1313 aaKnown RBP9.4□□□□□ -0.9
VPS35-206ENST00000565228 A0A0A6YYK5 440 aaPredicted RBP9.4□□□□□ -0.9
VPS35-206ENST00000565228 EDDM13A0A1B0GTR0 161 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms