RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SNAP91O60641 907 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 RNGTTO60942 597 aaKnown RBP17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 MMP8P22894 467 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 CHRNA3P32297 505 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 TAS2R38P59533 333 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 NRG1Q02297 640 aaPredicted RBP17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 SLC20A2Q08357 652 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 KRT31Q15323 416 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 SMAD1Q15797 465 aaKnown RBP17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 C2CD6Q53TS8 623 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 PIP5KL1Q5T9C9 394 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 NAA35Q5VZE5 725 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 GALNT15Q8N3T1 639 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 ATP11CQ8NB49 1132 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 CFAP57Q96MR6 1250 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 TMPRSS4Q9NRS4 437 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 MPP6Q9NZW5 540 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 DKK4Q9UBT3 224 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 FARP1Q9Y4F1 1045 aaPredicted RBP17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 PCDHGA1Q9Y5H4 931 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 FREM2Q5SZK8 3169 aa17.63■□□□□ 0.41
VPS9D1-203ENST00000563798 PTPRBP23467 1997 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 PKD1L2Q7Z442 2459 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 A0A0D9SEW6 157 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 MAGEC1O60732 1142 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 ZMPSTE24O75844 475 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 CTSLP07711 333 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 ZNF18P17022 549 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 CHRNB2P17787 502 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 EPHA8P29322 1005 aaPredicted RBP17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 OR1E1P30953 314 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 ARRB1P49407 418 aaPredicted RBP17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 FMO1Q01740 532 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 CCDC15Q0P6D6 951 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 TRIM72Q6ZMU5 477 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 ZYG11BQ9C0D3 744 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 VPS16Q9H269 839 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 FTSJ1Q9UET6 329 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 SIK3Q9Y2K2 1263 aa17.62■□□□□ 0.41
VPS9D1-203ENST00000563798 PRAMEF26H0Y7S4 382 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 GOLGA8SH3BPF8 625 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 K7ERQ8 282 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 SMAD6O43541 496 aaKnown RBP17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 ZNF821O75541 412 aaPredicted RBP17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 GFPT2O94808 682 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 PRNPP04156 253 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 C1SP09871 688 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 CDK4P11802 303 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 SOX5P35711 763 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 GSCP56915 257 aaPredicted RBP17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 IL9RQ01113 521 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 SETMARQ53H47 684 aaPredicted RBP17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 PRAMEF14Q5SWL7 426 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 MANEALQ5VSG8 457 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 SFMBT2Q5VUG0 894 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 RETSATQ6NUM9 610 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 KANSL1Q7Z3B3 1105 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 TFAP2DQ7Z6R9 452 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 FAM131BQ86XD5 332 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 SPATS2Q86XZ4 545 aaKnown RBP17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 GATAD2AQ86YP4 633 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 TMEM145Q8NBT3 493 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 SLC20A1Q8WUM9 679 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 CENPIQ92674 756 aaPredicted RBP17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 HDAC8Q9BY41 377 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 CEP44Q9C0F1 390 aa17.61■□□□□ 0.41
VPS9D1-203ENST00000563798 TP53BP1Q12888 1972 aaPredicted RBP17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 FAM208BQ5VWN6 2430 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 LRRC10BA6NIK2 292 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 EPHB6O15197 1021 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 ITGAVP06756 1048 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 TPM2P07951 284 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 UNGP13051 313 aaPredicted RBP17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 RRM1P23921 792 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 ADRA1BP35368 520 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 PTPN9P43378 593 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 POLR2FP61218 127 aaKnown RBP17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 CAMK2BQ13554 666 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 CCDC14Q49A88 953 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 C22orf39Q6P5X5 142 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 PLPP6Q8IY26 295 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 OR7D4Q8NG98 312 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 OSBPL2Q9H1P3 480 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 CCDC86Q9H6F5 360 aaKnown RBP17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 METTL5Q9NRN9 209 aaKnown RBP17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 FANCLQ9NW38 375 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 DOCK4Q8N1I0 1966 aa17.6■□□□□ 0.41
VPS9D1-203ENST00000563798 C2CD4BA6NLJ0 364 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 SRGAP2O75044 1071 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 MAT2AP31153 395 aaKnown RBP17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 STAT1P42224 750 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 KLK7P49862 253 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 SERPINH1P50454 418 aaKnown RBP17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 GNA12Q03113 381 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 PTP4A2Q12974 167 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 STAT4Q14765 748 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 POM121L1PQ3SYA9 428 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 FKBP15Q5T1M5 1219 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 LINGO4Q6UY18 593 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 STRADAQ7RTN6 431 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms