RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 DPYSL3Q14195 570 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 TMCO4Q5TGY1 634 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 ANO7Q6IWH7 933 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 USP45Q70EL2 814 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 ANKS1BQ7Z6G8 1248 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 STRA8Q7Z7C7 330 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 RAB42Q8N4Z0 105 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 PPP1R16AQ96I34 528 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 PPP1R2P1Q96PQ5 205 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 KCTD15Q96SI1 283 aaPredicted RBP9.4□□□□□ -0.9
VPS39-205ENST00000562258 NMUR1Q9HB89 426 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 PCDH9Q9HC56 1237 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 CYP4F12Q9HCS2 524 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 MED4Q9NPJ6 270 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 TRHDEQ9UKU6 1024 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 R3HDM2Q9Y2K5 976 aaKnown RBP9.4□□□□□ -0.9
VPS39-205ENST00000562258 BDP1A6H8Y1 2624 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 hCG_1818297A0A087WSY0 165 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 ERI2A8K979 691 aaKnown RBP9.4□□□□□ -0.91
VPS39-205ENST00000562258 CCL22O00626 93 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 PRKCGP05129 697 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 GPR1P46091 355 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 NRLP54845 237 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 WNT3AP56704 352 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 DLG2Q15700 870 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 SPDYAQ5MJ70 313 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 BBS12Q6ZW61 710 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 MRPL10Q7Z7H8 261 aaKnown RBP9.4□□□□□ -0.91
VPS39-205ENST00000562258 IRGQQ8WZA9 623 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 HERVK_113Q902F9 699 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 ZNF670Q9BS34 389 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 ZCWPW1Q9H0M4 648 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 SEMA4AQ9H3S1 761 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 MID2Q9UJV3 735 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 TBX21Q9UL17 535 aa9.4□□□□□ -0.91
VPS39-205ENST00000562258 TDRKHQ9Y2W6 561 aaKnown RBP9.4□□□□□ -0.91
VPS39-205ENST00000562258 A0A0A0MRY4 1105 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 MEI4A8MW99 385 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 CDH16O75309 829 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 LUC7L3O95232 432 aaKnown RBP9.39□□□□□ -0.91
VPS39-205ENST00000562258 HLA-EP13747 358 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 IGFBP6P24592 240 aaPredicted RBP9.39□□□□□ -0.91
VPS39-205ENST00000562258 RPL22P35268 128 aaKnown RBP9.39□□□□□ -0.91
VPS39-205ENST00000562258 IRS1P35568 1242 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 STAT4Q14765 748 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 INSCQ1MX18 579 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 FOXR1Q6PIV2 292 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 TMEM110Q86TL2 294 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 DEFB119Q8N690 84 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 HMCESQ96FZ2 354 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 SPATA13Q96N96 652 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 TTYH3Q9C0H2 523 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.39□□□□□ -0.91
VPS39-205ENST00000562258 HBS1LQ9Y450 684 aaKnown RBP9.39□□□□□ -0.91
VPS39-205ENST00000562258 BCORQ6W2J9 1755 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 DIAPH2O60879 1101 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 SMIM24O75264 130 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 FSBPO95073 299 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 GUCA1CO95843 209 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 MT-CYBP00156 380 aaPredicted RBP9.39□□□□□ -0.91
VPS39-205ENST00000562258 PROZP22891 400 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 PTPN7P35236 360 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 SERPINH1P50454 418 aaKnown RBP9.39□□□□□ -0.91
VPS39-205ENST00000562258 DSC2Q02487 901 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 RBBP7Q16576 425 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 KIF19Q2TAC6 998 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 TCEAL5Q5H9L2 206 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.39□□□□□ -0.91
VPS39-205ENST00000562258 PRR23BQ6ZRT6 265 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 PRELID2Q8N945 189 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 SLC4A5Q9BY07 1137 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 NSUN3Q9H649 340 aaKnown RBP9.39□□□□□ -0.91
VPS39-205ENST00000562258 PKD2L2Q9NZM6 624 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 MTRRQ9UBK8 725 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 ZNHIT2Q9UHR6 403 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 COCHO43405 550 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 AVILO75366 819 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 BANF1O75531 89 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 TYRP14679 529 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 RHOQP17081 205 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 RPL21P46778 160 aaKnown RBP9.39□□□□□ -0.91
VPS39-205ENST00000562258 USP46P62068 366 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 MPP3Q13368 585 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 E2F5Q15329 346 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 TTLL9Q3SXZ7 439 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 LRRC38Q5VT99 294 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 ARMCX6Q7L4S7 300 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 ANKRD33Q7Z3H0 272 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 MMAAQ8IVH4 418 aaKnown RBP9.39□□□□□ -0.91
VPS39-205ENST00000562258 TDHQ8IZJ6 230 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 CELF5Q8N6W0 485 aaKnown RBP9.39□□□□□ -0.91
VPS39-205ENST00000562258 MRPL43Q8N983 215 aaKnown RBP9.39□□□□□ -0.91
VPS39-205ENST00000562258 IRF7Q92985 503 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 ARMC5Q96C12 935 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 SAMD11Q96NU1 681 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 DRC3Q9H069 523 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 ZNF510Q9Y2H8 683 aa9.39□□□□□ -0.91
VPS39-205ENST00000562258 LINC01553A4QN01 128 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CFLARO15519 480 aa9.38□□□□□ -0.91
VPS39-205ENST00000562258 CTIFO43310 598 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms