RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 TRIP4Q15650 581 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 PTRHD1Q6GMV3 140 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 NAPEPLDQ6IQ20 393 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 ARMCX6Q7L4S7 300 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 SCD5Q86SK9 330 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 TMEM25Q86YD3 366 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 PPIL6Q8IXY8 311 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 LRRC57Q8N9N7 239 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 BPIFB1Q8TDL5 484 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 HMGB4Q8WW32 186 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 ELMO2Q96JJ3 720 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 TSPAN18Q96SJ8 248 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 TTC1Q99614 292 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CWH43Q9H720 699 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 CPSF2Q9P2I0 782 aaKnown RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 FBXW11Q9UKB1 542 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 COLQQ9Y215 455 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-209ENST00000560637 LAMA3Q16787 3333 aa5.55□□□□□ -1.52
VPS13C-209ENST00000560637 TBC1D3DA0A087WVF3 549 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TBC1D3IA0A087WXS9 549 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TBC1D3EA0A087X179 549 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TBC1D3KA0A087X1G2 549 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 C1orf232A0A0U1RR37 186 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 CFAP69A5D8W1 941 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TBC1D3FA6NER0 549 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 C2orf71A6NGG8 1288 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 POM121CA8CG34 1229 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TBC1D3LB9A6J9 549 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 WASH3PC4AMC7 463 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 GABRDO14764 452 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 LIASO43766 372 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SNX2O60749 519 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ADH1CP00326 375 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TBC1D3HP0C7X1 549 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ERVK-10P10266 1014 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 GARSP41250 739 aaKnown RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 GRIA1P42261 906 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 PSMD8P48556 350 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ZNF132P52740 706 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 CLDN10P78369 228 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 FAM189BP81408 668 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SLC10A7Q0GE19 358 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 RAB33AQ14088 237 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SLC45A4Q5BKX6 768 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 CERCAMQ5T4B2 595 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ADGRF1Q5T601 910 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TBC1D3GQ6DHY5 549 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TBC1D3CQ6IPX1 549 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ANO7Q6IWH7 933 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 C16orf46Q6P387 395 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TTC27Q6P3X3 843 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 RHBDF2Q6PJF5 856 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 CCNI2Q6ZMN8 369 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 BBS12Q6ZW61 710 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ADCK2Q7Z695 626 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 RPAINQ86UA6 219 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 CAMK1DQ8IU85 385 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TBC1D3Q8IZP1 549 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ACTRT1Q8TDG2 376 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 EPS8L3Q8TE67 593 aaKnown RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 STK32AQ8WU08 396 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 FGF13Q92913 245 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 IGSF8Q969P0 613 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 C8orf48Q96LL4 319 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 RTP3Q9BQQ7 232 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SLC46A2Q9BY10 475 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 POLR1EQ9GZS1 481 aaKnown RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TASP1Q9H6P5 420 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 VRTNQ9H8Y1 702 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 OSER1Q9NX31 292 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ARHGEF38Q9NXL2 777 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 DTLQ9NZJ0 730 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SEPT3Q9UH03 358 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SLCO3A1Q9UIG8 710 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 AGO1Q9UL18 857 aaKnown RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 RAD54BQ9Y620 910 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 FOXO6A8MYZ6 492 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SH3BP5O60239 455 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ANXA9O76027 345 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 IGSF6O95976 241 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SERPIND1P05546 499 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 L1CAMP32004 1257 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 GNGT1P63211 74 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 AMPD2Q01433 879 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 BOP1Q14137 746 aaKnown RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 GRIN2CQ14957 1233 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 DLG2Q15700 870 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 MS4A13Q5J8X5 152 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TMEM31Q5JXX7 168 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 BRMS1LQ5PSV4 323 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TIGD7Q6NT04 549 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 GLT6D1Q7Z4J2 308 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SDCCAG8Q86SQ7 713 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 MMAAQ8IVH4 418 aaKnown RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SPATA6LQ8N4H0 392 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ARHGEF2Q92974 986 aaKnown RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SH3KBP1Q96B97 665 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 NSUN3Q9H649 340 aaKnown RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 INTS9Q9NV88 658 aaKnown RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 MARCOQ9UEW3 520 aaPredicted RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms