RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TFDP3Q5H9I0 405 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 MAMSTRQ6ZN01 415 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 ZNF354CQ86Y25 554 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 SLC35F6Q8N357 371 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 UBL4BQ8N7F7 174 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 KDM1BQ8NB78 822 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 FRS2Q8WU20 508 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 HHIPQ96QV1 700 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 HEMGNQ9BXL5 484 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 TLR10Q9BXR5 811 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 DTLQ9NZJ0 730 aa22.24■■□□□ 1.15
SNX1-210ENST00000560260 APOL1O14791 398 aa22.23■■□□□ 1.15
SNX1-210ENST00000560260 ATP9BO43861 1147 aa22.23■■□□□ 1.15
SNX1-210ENST00000560260 PRAMEF11O60813 436 aa22.23■■□□□ 1.15
SNX1-210ENST00000560260 TDGF1P13385 188 aa22.23■■□□□ 1.15
SNX1-210ENST00000560260 PECAM1P16284 738 aaPredicted RBP22.23■■□□□ 1.15
SNX1-210ENST00000560260 PTPN7P35236 360 aa22.23■■□□□ 1.15
SNX1-210ENST00000560260 ST8SIA6P61647 398 aa22.23■■□□□ 1.15
SNX1-210ENST00000560260 GALNT2Q10471 571 aa22.23■■□□□ 1.15
SNX1-210ENST00000560260 ZNF569Q5MCW4 686 aa22.23■■□□□ 1.15
SNX1-210ENST00000560260 TRAF3IP1Q8TDR0 691 aaPredicted RBP22.23■■□□□ 1.15
SNX1-210ENST00000560260 LRRN4Q8WUT4 740 aa22.23■■□□□ 1.15
SNX1-210ENST00000560260 KCND1Q9NSA2 647 aa22.23■■□□□ 1.15
SNX1-210ENST00000560260 CACNA1IQ9P0X4 2223 aa22.23■■□□□ 1.15
SNX1-210ENST00000560260 CST8O60676 142 aa22.22■■□□□ 1.15
SNX1-210ENST00000560260 ZNF821O75541 412 aaPredicted RBP22.22■■□□□ 1.15
SNX1-210ENST00000560260 PAPSS2O95340 614 aaPredicted RBP22.22■■□□□ 1.15
SNX1-210ENST00000560260 EPHX1P07099 455 aa22.22■■□□□ 1.15
SNX1-210ENST00000560260 CXCL12P48061 93 aa22.22■■□□□ 1.15
SNX1-210ENST00000560260 CCR3P51677 355 aa22.22■■□□□ 1.15
SNX1-210ENST00000560260 COPS2P61201 443 aa22.22■■□□□ 1.15
SNX1-210ENST00000560260 RPS6KA1Q15418 735 aa22.22■■□□□ 1.15
SNX1-210ENST00000560260 HNRNPA1L2Q32P51 320 aaKnown RBP22.22■■□□□ 1.15
SNX1-210ENST00000560260 RETSATQ6NUM9 610 aa22.22■■□□□ 1.15
SNX1-210ENST00000560260 TSSK4Q6SA08 328 aa22.22■■□□□ 1.15
SNX1-210ENST00000560260 C1orf210Q8IVY1 113 aa22.22■■□□□ 1.15
SNX1-210ENST00000560260 ATP11CQ8NB49 1132 aa22.22■■□□□ 1.15
SNX1-210ENST00000560260 OSBPL8Q9BZF1 889 aa22.22■■□□□ 1.15
SNX1-210ENST00000560260 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.22■■□□□ 1.15
SNX1-210ENST00000560260 IPO11Q9UI26 975 aaKnown RBP22.22■■□□□ 1.15
SNX1-210ENST00000560260 FCF1Q9Y324 198 aaKnown RBP22.22■■□□□ 1.15
SNX1-210ENST00000560260 ENC1O14682 589 aa22.21■■□□□ 1.15
SNX1-210ENST00000560260 PEX11BO96011 259 aa22.21■■□□□ 1.15
SNX1-210ENST00000560260 TFDP2Q14188 446 aa22.21■■□□□ 1.15
SNX1-210ENST00000560260 DLG2Q15700 870 aa22.21■■□□□ 1.15
SNX1-210ENST00000560260 SDE2Q6IQ49 451 aa22.21■■□□□ 1.15
SNX1-210ENST00000560260 C22orf39Q6P5X5 142 aa22.21■■□□□ 1.15
SNX1-210ENST00000560260 Q6ZVU0 165 aa22.21■■□□□ 1.15
SNX1-210ENST00000560260 BBS12Q6ZW61 710 aa22.21■■□□□ 1.15
SNX1-210ENST00000560260 PTPRN2Q92932 1015 aa22.21■■□□□ 1.15
SNX1-210ENST00000560260 MAK16Q9BXY0 300 aaKnown RBP22.21■■□□□ 1.15
SNX1-210ENST00000560260 SLC6A17Q9H1V8 727 aa22.21■■□□□ 1.15
SNX1-210ENST00000560260 PRSS16Q9NQE7 514 aa22.21■■□□□ 1.15
SNX1-210ENST00000560260 SAE1Q9UBE0 346 aaPredicted RBP22.21■■□□□ 1.15
SNX1-210ENST00000560260 HPCAL4Q9UM19 191 aa22.21■■□□□ 1.15
SNX1-210ENST00000560260 WDFY4Q6ZS81 3184 aa22.21■■□□□ 1.15
SNX1-210ENST00000560260 CXorf51AA0A1B0GTR3 108 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 GOLGA6L9A6NEM1 432 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 LAMTOR5O43504 91 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 MAFKO60675 156 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 SIN3BO75182 1162 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 TMCC1O94876 653 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 COPAP53621 1224 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 DMWDQ09019 674 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 CAMK2GQ13555 558 aaPredicted RBP22.2■■□□□ 1.14
SNX1-210ENST00000560260 C9orf64Q5T6V5 341 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 ATPAF2Q8N5M1 289 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 HAUS1Q96CS2 278 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 OLFM3Q96PB7 478 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 PRDM16Q9HAZ2 1276 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 SP110Q9HB58 689 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 UBA2Q9UBT2 640 aaPredicted RBP22.2■■□□□ 1.14
SNX1-210ENST00000560260 SLC8A2Q9UPR5 921 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 HEY1Q9Y5J3 304 aa22.2■■□□□ 1.14
SNX1-210ENST00000560260 TCRBV21S2A2A0A5A6 115 aa22.19■■□□□ 1.14
SNX1-210ENST00000560260 ZSCAN5CA6NGD5 496 aaPredicted RBP22.19■■□□□ 1.14
SNX1-210ENST00000560260 KIF5CO60282 957 aa22.19■■□□□ 1.14
SNX1-210ENST00000560260 ZFXP17010 805 aaPredicted RBP22.19■■□□□ 1.14
SNX1-210ENST00000560260 GARSP41250 739 aaKnown RBP22.19■■□□□ 1.14
SNX1-210ENST00000560260 CLCN6P51797 869 aa22.19■■□□□ 1.14
SNX1-210ENST00000560260 IL10RBQ08334 325 aa22.19■■□□□ 1.14
SNX1-210ENST00000560260 SLC20A2Q08357 652 aa22.19■■□□□ 1.14
SNX1-210ENST00000560260 E2F5Q15329 346 aa22.19■■□□□ 1.14
SNX1-210ENST00000560260 CYTH1Q15438 398 aa22.19■■□□□ 1.14
SNX1-210ENST00000560260 ZNF419Q96HQ0 510 aaPredicted RBP22.19■■□□□ 1.14
SNX1-210ENST00000560260 TNKS2Q9H2K2 1166 aa22.19■■□□□ 1.14
SNX1-210ENST00000560260 SHROOM3Q8TF72 1996 aa22.19■■□□□ 1.14
SNX1-210ENST00000560260 EDDM13A0A1B0GTR0 161 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 TCRBV7S2A1N4TA0A589 114 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 KCNK3O14649 394 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 GALR2O43603 387 aaPredicted RBP22.18■■□□□ 1.14
SNX1-210ENST00000560260 ATP1A1P05023 1023 aaKnown RBP22.18■■□□□ 1.14
SNX1-210ENST00000560260 GABRG2P18507 467 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 TGM2P21980 687 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 NNMTP40261 264 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 PXNP49023 591 aaPredicted RBP22.18■■□□□ 1.14
SNX1-210ENST00000560260 DGKEP52429 567 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 STARD3Q14849 445 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 ACCSLQ4AC99 568 aa22.18■■□□□ 1.14
SNX1-210ENST00000560260 B4GALNT4Q76KP1 1039 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms