RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 CEP44Q9C0F1 390 aa10.92□□□□□ -0.66
LINC00239-201ENST00000556973 ARRDC1-AS1Q9H2J1 176 aa10.92□□□□□ -0.66
LINC00239-201ENST00000556973 NOL6Q9H6R4 1146 aaKnown RBP10.92□□□□□ -0.66
LINC00239-201ENST00000556973 OSGEPQ9NPF4 335 aa10.92□□□□□ -0.66
LINC00239-201ENST00000556973 CD93Q9NPY3 652 aa10.92□□□□□ -0.66
LINC00239-201ENST00000556973 LUC7LQ9NQ29 371 aaKnown RBP10.92□□□□□ -0.66
LINC00239-201ENST00000556973 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.92□□□□□ -0.66
LINC00239-201ENST00000556973 CWC15Q9P013 229 aaKnown RBP10.92□□□□□ -0.66
LINC00239-201ENST00000556973 PCDHA13Q9Y5I0 950 aa10.92□□□□□ -0.66
LINC00239-201ENST00000556973 SPAG17Q6Q759 2223 aa10.92□□□□□ -0.66
LINC00239-201ENST00000556973 NUP205Q92621 2012 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 BCLAF3A2AJT9 711 aaKnown RBP10.91□□□□□ -0.66
LINC00239-201ENST00000556973 H3BRJ5 948 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 K7ERQ8 282 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 SMAD6O43541 496 aaKnown RBP10.91□□□□□ -0.66
LINC00239-201ENST00000556973 CD160O95971 181 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 IL1BP01584 269 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 VAV1P15498 845 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 TCF4P15884 667 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 ERCC2P18074 760 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 MAN1A1P33908 653 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 DHPSP49366 369 aaPredicted RBP10.91□□□□□ -0.66
LINC00239-201ENST00000556973 CREB5Q02930 508 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 ZNF33AQ06730 810 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 SERINC3Q13530 473 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 MESDQ14696 234 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 CSRP2Q16527 193 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 SMTNL2Q2TAL5 461 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 INO80DQ53TQ3 878 aaPredicted RBP10.91□□□□□ -0.66
LINC00239-201ENST00000556973 PLA2G2CQ5R387 149 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 SYCP2LQ5T4T6 812 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 FAM46CQ5VWP2 391 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 POLNQ7Z5Q5 900 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 ZNF354CQ86Y25 554 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 PLPP6Q8IY26 295 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 LZTR1Q8N653 840 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 PCDH20Q8N6Y1 951 aaKnown RBP10.91□□□□□ -0.66
LINC00239-201ENST00000556973 CASKIN2Q8WXE0 1202 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 RFFLQ8WZ73 363 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 OR8D1Q8WZ84 308 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 FOXJ1Q92949 421 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 ISG20Q96AZ6 181 aaKnown RBP10.91□□□□□ -0.66
LINC00239-201ENST00000556973 OMDQ99983 421 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 BTBD1Q9H0C5 482 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 PCED1AQ9H1Q7 454 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 PABPC3Q9H361 631 aaKnown RBP10.91□□□□□ -0.66
LINC00239-201ENST00000556973 LRRC19Q9H756 370 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 SGK2Q9HBY8 427 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 FBXL12Q9NXK8 326 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 PPM1HQ9ULR3 514 aa10.91□□□□□ -0.66
LINC00239-201ENST00000556973 EPN1Q9Y6I3 576 aaPredicted RBP10.91□□□□□ -0.66
LINC00239-201ENST00000556973 VPS13AQ96RL7 3174 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 ABCA7Q8IZY2 2146 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 METTL12A8MUP2 240 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 GOLGA6L6A8MZA4 724 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 RASA4BC9J798 803 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 C1QTNF3-AMACRE9PGA6 284 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 MID1O15344 667 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 RASA4O43374 803 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 BUB1O43683 1085 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 BNIP3LO60238 219 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 ZNF821O75541 412 aaPredicted RBP10.9□□□□□ -0.66
LINC00239-201ENST00000556973 NDUFA10O95299 355 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 KRT7P08729 469 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 ZNF806P0C7X5 589 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 TGM1P22735 817 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 CHRNA3P32297 505 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 PTGER3P43115 390 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 RECQLP46063 649 aaPredicted RBP10.9□□□□□ -0.66
LINC00239-201ENST00000556973 HADHBP55084 474 aaKnown RBP10.9□□□□□ -0.66
LINC00239-201ENST00000556973 DPYSQ14117 519 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 KRT81Q14533 505 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 PDK2Q15119 407 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 CARD16Q5EG05 197 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 LYSMD4Q5XG99 296 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 TXNRD3NBQ6F5E7 133 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 Q6ZVU0 165 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 FAM124AQ86V42 546 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 CACUL1Q86Y37 369 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 KIAA2013Q8IYS2 634 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 HDDC3Q8N4P3 179 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 DEFB119Q8N690 84 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 TMIEQ8NEW7 156 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 OR2A12Q8NGT7 310 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 FAM71BQ8TC56 605 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 GANCQ8TET4 914 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 HMCESQ96FZ2 354 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 BAG1Q99933 345 aaPredicted RBP10.9□□□□□ -0.66
LINC00239-201ENST00000556973 GPR174Q9BXC1 333 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 SLC39A8Q9C0K1 460 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 KLC2Q9H0B6 622 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 NEUROG2Q9H2A3 272 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 VPS45Q9NRW7 570 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 SEMA4GQ9NTN9 838 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 RCOR3Q9P2K3 495 aaPredicted RBP10.9□□□□□ -0.66
LINC00239-201ENST00000556973 PILRBQ9UKJ0 227 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 FZD4Q9ULV1 537 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 CACNA1HO95180 2353 aa10.9□□□□□ -0.66
LINC00239-201ENST00000556973 A0A0A6YYK5 440 aaPredicted RBP10.89□□□□□ -0.67
LINC00239-201ENST00000556973 A0A1W2PP55 124 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms