RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 MS4A14Q96JA4 679 aa14.33□□□□□ -0.12
VIPAS39-208ENST00000556412 PBKQ96KB5 322 aa14.33□□□□□ -0.12
VIPAS39-208ENST00000556412 MRGPRX3Q96LB0 322 aa14.33□□□□□ -0.12
VIPAS39-208ENST00000556412 LGMNQ99538 433 aa14.33□□□□□ -0.12
VIPAS39-208ENST00000556412 MTG2Q9H4K7 406 aa14.33□□□□□ -0.12
VIPAS39-208ENST00000556412 POLR3BQ9NW08 1133 aaPredicted RBP14.33□□□□□ -0.12
VIPAS39-208ENST00000556412 UBA2Q9UBT2 640 aaPredicted RBP14.33□□□□□ -0.12
VIPAS39-208ENST00000556412 SLC8A2Q9UPR5 921 aa14.33□□□□□ -0.12
VIPAS39-208ENST00000556412 FCF1Q9Y324 198 aaKnown RBP14.33□□□□□ -0.12
VIPAS39-208ENST00000556412 RAD54BQ9Y620 910 aa14.33□□□□□ -0.12
VIPAS39-208ENST00000556412 ZSCAN5CA6NGD5 496 aaPredicted RBP14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 H7C0C1 242 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 PPP1R12AO14974 1030 aaPredicted RBP14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 ZNF185O15231 689 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 FANCGO15287 622 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 EPHX1P07099 455 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 SRPRAP08240 638 aaKnown RBP14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 SRCP12931 536 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 HNRNPLP14866 589 aaKnown RBP eCLIP14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 AOC1P19801 751 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 PRKCHP24723 683 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 NTSR1P30989 418 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 ATP5OP48047 213 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 SERPINH1P50454 418 aaKnown RBP14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 GEMIN4P57678 1058 aaKnown RBP14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 OTUD4Q01804 1114 aaKnown RBP14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 PDK1Q15118 436 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 E2F5Q15329 346 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 BZW1Q7L1Q6 419 aaKnown RBP14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 SH2D3CQ8N5H7 860 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 ACTL9Q8TC94 416 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 NSMCE1Q8WV22 266 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 SMARCAL1Q9NZC9 954 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 SEPT10Q9P0V9 454 aa14.32□□□□□ -0.12
VIPAS39-208ENST00000556412 SGK1O00141 431 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 SMAD6O43541 496 aaKnown RBP14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 SYNCRIPO60506 623 aaKnown RBP14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 MAFKO60675 156 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 NEBLO76041 1014 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 HOXB2P14652 356 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 TCP1P17987 556 aaKnown RBP14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 IL10RBQ08334 325 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 GAS6Q14393 721 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 DLG2Q15700 870 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 KCNV2Q8TDN2 545 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 CLDN23Q96B33 292 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 CAPZA3Q96KX2 299 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 OLFM3Q96PB7 478 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 TNKS2Q9H2K2 1166 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 PDFQ9HBH1 243 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 HS3ST2Q9Y278 367 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 R3HDM2Q9Y2K5 976 aaKnown RBP14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 SAR1BQ9Y6B6 198 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 MCF2LO15068 1137 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 ATG13O75143 517 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 TMCC1O94876 653 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 VAV1P15498 845 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 RPS9P46781 194 aaKnown RBP14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 EIF3EP60228 445 aaKnown RBP14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 SLC20A2Q08357 652 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 KLF1Q13351 362 aaPredicted RBP14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 STARD3Q14849 445 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 NOMO1Q15155 1222 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 EOGTQ5NDL2 527 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 PAPD7Q5XG87 772 aaKnown RBP14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 TIGD7Q6NT04 549 aaPredicted RBP14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 Q6ZVU0 165 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 LRRC49Q8IUZ0 686 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 CCDC13Q8IYE1 715 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 RYBPQ8N488 228 aaPredicted RBP14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 TTC13Q8NBP0 860 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 TFB1MQ8WVM0 346 aaKnown RBP14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 ATG4AQ8WYN0 398 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 HDAC11Q96DB2 347 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 MYO19Q96H55 970 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 CINPQ9BW66 212 aaPredicted RBP14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 TM6SF2Q9BZW4 377 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 CHRDQ9H2X0 955 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 C10orf88Q9H8K7 445 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 TTLL3Q9Y4R7 772 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 MYO10Q9HD67 2058 aa14.31□□□□□ -0.12
VIPAS39-208ENST00000556412 KCNK1O00180 336 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 PGRMC1O00264 195 aaKnown RBP14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 NPC1O15118 1278 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 ADAM23O75077 832 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 CD160O95971 181 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 CLCN5P51795 746 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 CLCN6P51797 869 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 RHOAP61586 193 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 MTAPQ13126 283 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 ZNF235Q14590 738 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 FAM182AQ5T1J6 154 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 TMCO4Q5TGY1 634 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 C22orf39Q6P5X5 142 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 FBXL6Q8N531 539 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 C1orf54Q8WWF1 131 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 EXOC2Q96KP1 924 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 TMEM245Q9H330 911 aa14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 SPATA6Q9NWH7 488 aaPredicted RBP14.3□□□□□ -0.12
VIPAS39-208ENST00000556412 MMP17Q9ULZ9 603 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms