RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 OR2A12Q8NGT7 310 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 TBC1D31Q96DN5 1066 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 EIF3CQ99613 913 aaKnown RBP16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 MAGEH1Q9H213 219 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 HAUS4Q9H6D7 363 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 TM9SF3Q9HD45 589 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 TAS2R14Q9NYV8 317 aa16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 FARP1Q9Y4F1 1045 aaPredicted RBP16.42■□□□□ 0.22
CCDC88C-209ENST00000554872 FAM72CH0Y354 149 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 CER1O95813 267 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 CD59P13987 128 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 GEMIN4P57678 1058 aaKnown RBP16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 RACK1P63244 317 aaKnown RBP16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 BNC1Q01954 994 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 MAMLD1Q13495 774 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 TEAD4Q15561 434 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 ZSCAN23Q3MJ62 389 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 EFHC2Q5JST6 749 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 FAM72AQ5TYM5 149 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 FAM72DQ6L9T8 149 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 PSAPL1Q6NUJ1 521 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 C22orf39Q6P5X5 142 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 NCEH1Q6PIU2 408 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 PHLDB2Q86SQ0 1253 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 FAM72BQ86X60 149 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 PCDH20Q8N6Y1 951 aaKnown RBP16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 ATP11CQ8NB49 1132 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 TMIEQ8NEW7 156 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 GANCQ8TET4 914 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 ISG20Q96AZ6 181 aaKnown RBP16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 GTPBP2Q9BX10 602 aaKnown RBP16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 MIR1-1HGQ9H1L0 117 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 SLC32A1Q9H598 525 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 FSCN3Q9NQT6 498 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 SARDHQ9UL12 918 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 PCDHGB2Q9Y5G2 931 aa16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 BZW2Q9Y6E2 419 aaKnown RBP16.41■□□□□ 0.22
CCDC88C-209ENST00000554872 WASH4PA8MWX3 477 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 DDX3XO00571 662 aaKnown RBP eCLIP16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 PLRG1O43660 514 aaKnown RBP16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 ZNF821O75541 412 aaPredicted RBP16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 FSBPO95073 299 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 PRNPP04156 253 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 MYBL1P10243 752 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 ARF5P84085 180 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 KLHL30Q0D2K2 578 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 UAP1L1Q3KQV9 507 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 ACCSLQ4AC99 568 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 N4BP2L1Q5TBK1 243 aaPredicted RBP16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 AGBL4Q5VU57 503 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 DCUN1D2Q6PH85 259 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 RTL3Q8N8U3 475 aaKnown RBP16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 OR7D4Q8NG98 312 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 PIP4K2CQ8TBX8 421 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 SNX19Q92543 992 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 TRIM11Q96F44 468 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 ISCUQ9H1K1 167 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 ATP13A1Q9HD20 1204 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 FZD10Q9ULW2 581 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 ADAMTS9Q9P2N4 1935 aa16.4■□□□□ 0.22
CCDC88C-209ENST00000554872 TMEM191CA6NGB0 347 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 ZSCAN5CA6NGD5 496 aaPredicted RBP16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 GOLGA6L19H0YKK7 550 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 VILLO15195 856 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 SMAD6O43541 496 aaKnown RBP16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 RTN2O75298 545 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 UBASH3AP57075 661 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 OGDHQ02218 1023 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 CCDC15Q0P6D6 951 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 HGSNATQ68CP4 663 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 NEK5Q6P3R8 708 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 DBX2Q6ZNG2 339 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 TMC6Q7Z403 805 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 TRIM69Q86WT6 500 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 PSTKQ8IV42 348 aaKnown RBP16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 DRC7Q8IY82 874 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 ARHGEF2Q92974 986 aaKnown RBP16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 EPAS1Q99814 870 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 NCAPGQ9BPX3 1015 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 PREBQ9HCU5 417 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 NDFIP2Q9NV92 336 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 DONSONQ9NYP3 566 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 CAPN11Q9UMQ6 739 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 SLCO1B1Q9Y6L6 691 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 SCINQ9Y6U3 715 aa16.39■□□□□ 0.21
CCDC88C-209ENST00000554872 K7ERQ8 282 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 CBX4O00257 560 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 FGF10O15520 208 aaPredicted RBP16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 DFNA5O60443 496 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 RAMP2O60895 175 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 CD160O95971 181 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 FTLP02792 175 aaPredicted RBP16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 CTSLP07711 333 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 GLDCP23378 1020 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 CHRNA3P32297 505 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 ZNF135P52742 658 aaPredicted RBP16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 YBEYP58557 167 aaPredicted RBP16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 ZBED6P86452 979 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 ZNF252P-AS1Q0IIN9 211 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 CNTN1Q12860 1018 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms