RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 CXorf38Q8TB03 319 aa15.92■□□□□ 0.14
CUX1-211ENST00000546411 SLC8A2Q9UPR5 921 aa15.92■□□□□ 0.14
CUX1-211ENST00000546411 CITO14578 2027 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 TBKBP1A7MCY6 615 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 PAGE1O75459 146 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 SOAT2O75908 522 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 WEE1P30291 646 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 L1CAMP32004 1257 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 PFKFB4Q16877 469 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 FBXO48Q5FWF7 155 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 PCID2Q5JVF3 399 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 C15orf39Q6ZRI6 1047 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 TTC30BQ8N4P2 665 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 PPP1R2P1Q96PQ5 205 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 SYT11Q9BT88 431 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 THUMPD3Q9BV44 507 aaKnown RBP15.91■□□□□ 0.14
CUX1-211ENST00000546411 TRIM54Q9BYV2 358 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 LRMDAQ9H2I8 198 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 ZNF112Q9UJU3 913 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 HEATR9A2RTY3 570 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 PEX1O43933 1283 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 FKBP6O75344 327 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 FGFR3P22607 806 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 FMO4P31512 558 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 SERPINH1P50454 418 aaKnown RBP15.91■□□□□ 0.14
CUX1-211ENST00000546411 FAM110CQ1W6H9 321 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 TEX44Q53QW1 395 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 NOL9Q5SY16 702 aaKnown RBP15.91■□□□□ 0.14
CUX1-211ENST00000546411 ULK2Q8IYT8 1036 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 CFAP52Q8N1V2 620 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 NIPA2Q8N8Q9 360 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 SCAMP5Q8TAC9 235 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 DDI1Q8WTU0 396 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 ZNF184Q99676 751 aaPredicted RBP15.91■□□□□ 0.14
CUX1-211ENST00000546411 CCT7Q99832 543 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 SEMA3CQ99985 751 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 EBF4Q9BQW3 602 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 YY1AP1Q9H869 796 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 TLR8Q9NR97 1041 aaKnown RBP15.91■□□□□ 0.14
CUX1-211ENST00000546411 TTC36A6NLP5 189 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 ATG7O95352 703 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 ELNP15502 786 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 SP100P23497 879 aaPredicted RBP15.91■□□□□ 0.14
CUX1-211ENST00000546411 MPSTP25325 297 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 NNMTP40261 264 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 FASTKQ14296 549 aaKnown RBP15.91■□□□□ 0.14
CUX1-211ENST00000546411 TDRPQ86YL5 185 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 ZNF398Q8TD17 642 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 KLHL4Q9C0H6 718 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 FBXO44Q9H4M3 255 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 CCDC134Q9H6E4 229 aa15.91■□□□□ 0.14
CUX1-211ENST00000546411 HBS1LQ9Y450 684 aaKnown RBP15.91■□□□□ 0.14
CUX1-211ENST00000546411 TSHRP16473 764 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 CDK7P50613 346 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 WNT3AP56704 352 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 ZNF460Q14592 562 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 PSMD5Q16401 504 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 KHDC1Q4VXA5 237 aaKnown RBP15.9■□□□□ 0.14
CUX1-211ENST00000546411 SCARA3Q6AZY7 606 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 RFWD3Q6PCD5 774 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 LZTR1Q8N653 840 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 NMD3Q96D46 503 aaKnown RBP15.9■□□□□ 0.14
CUX1-211ENST00000546411 ZMAT2Q96NC0 199 aaKnown RBP15.9■□□□□ 0.14
CUX1-211ENST00000546411 PADI3Q9ULW8 664 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 TK2O00142 265 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 VPS26AO75436 327 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 GABRB2P47870 512 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 FLT3LGP49771 235 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 SH3BGRP55822 239 aaPredicted RBP15.9■□□□□ 0.14
CUX1-211ENST00000546411 CHADLQ6NUI6 762 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 DNAJC14Q6Y2X3 702 aaPredicted RBP15.9■□□□□ 0.14
CUX1-211ENST00000546411 GANCQ8TET4 914 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 BRI3BPQ8WY22 251 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 HDAC10Q969S8 669 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 ADAM7Q9H2U9 754 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 SCUBE2Q9NQ36 999 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 ENTPD7Q9NQZ7 604 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 LSM7Q9UK45 103 aaKnown RBP15.9■□□□□ 0.14
CUX1-211ENST00000546411 SH3BP1Q9Y3L3 701 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 MANSC4A6NHS7 340 aaPredicted RBP15.9■□□□□ 0.14
CUX1-211ENST00000546411 SAC3D1A6NKF1 404 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 SMNDC1O75940 238 aaKnown RBP eCLIP15.9■□□□□ 0.141e-5■■□□□ 11.9
CUX1-211ENST00000546411 HIST1H2AGP0C0S8 130 aaPredicted RBP15.9■□□□□ 0.14
CUX1-211ENST00000546411 TFEBP19484 476 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 HIST1H2ADP20671 130 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 IVDP26440 423 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 PTPN9P43378 593 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 C6orf89Q6UWU4 347 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 TOP6BLQ8N6T0 577 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 CATSPER1Q8NEC5 780 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 ZC3H15Q8WU90 426 aaKnown RBP15.9■□□□□ 0.14
CUX1-211ENST00000546411 VPS50Q96JG6 964 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 HIST1H2AHQ96KK5 128 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 HIST1H2AJQ99878 128 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 H2AFJQ9BTM1 129 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 TRPM5Q9NZQ8 1165 aa15.9■□□□□ 0.14
CUX1-211ENST00000546411 AHDC1Q5TGY3 1603 aaPredicted RBP15.9■□□□□ 0.14
CUX1-211ENST00000546411 RHOAP61586 193 aa15.89■□□□□ 0.14
CUX1-211ENST00000546411 PITX1P78337 314 aaPredicted RBP15.89■□□□□ 0.14
CUX1-211ENST00000546411 NRF1Q16656 503 aa15.89■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms