RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 ZWILCHQ9H900 591 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.37■□□□□ 0.05
CPSF1-208ENST00000532560 TNRC6BQ9UPQ9 1833 aaKnown RBP15.37■□□□□ 0.05
CPSF1-208ENST00000532560 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 ZSCAN5CA6NGD5 496 aaPredicted RBP15.36■□□□□ 0.05
CPSF1-208ENST00000532560 K7ERQ8 282 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 ADH1BP00325 375 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 RARAP10276 462 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 GOT1P17174 413 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 TGM1P22735 817 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 MPLP40238 635 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 DHPSP49366 369 aaPredicted RBP15.36■□□□□ 0.05
CPSF1-208ENST00000532560 SFSWAPQ12872 951 aaKnown RBP15.36■□□□□ 0.05
CPSF1-208ENST00000532560 DPYSQ14117 519 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 TCEAL1Q15170 157 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 PPP6R3Q5H9R7 873 aaPredicted RBP15.36■□□□□ 0.05
CPSF1-208ENST00000532560 KCNT1Q5JUK3 1230 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 PLA2G2CQ5R387 149 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 LYSMD4Q5XG99 296 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 TXNRD3NBQ6F5E7 133 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 CYP2U1Q7Z449 544 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 DSG4Q86SJ6 1040 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 MMAAQ8IVH4 418 aaKnown RBP15.36■□□□□ 0.05
CPSF1-208ENST00000532560 TMEFF1Q8IYR6 380 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 SLC35G2Q8TBE7 412 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 HSPH1Q92598 858 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 TOE1Q96GM8 510 aaKnown RBP15.36■□□□□ 0.05
CPSF1-208ENST00000532560 CCDC114Q96M63 670 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 ARRDC1-AS1Q9H2J1 176 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 PARD6AQ9NPB6 346 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 OSGEPQ9NPF4 335 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 CWC15Q9P013 229 aaKnown RBP15.36■□□□□ 0.05
CPSF1-208ENST00000532560 IMPACTQ9P2X3 320 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 HPCAL4Q9UM19 191 aa15.36■□□□□ 0.05
CPSF1-208ENST00000532560 RASA4BC9J798 803 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 H3BRJ5 948 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 MCF2LO15068 1137 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 MID1O15344 667 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 RASA4O43374 803 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 SMAD6O43541 496 aaKnown RBP15.35■□□□□ 0.05
CPSF1-208ENST00000532560 KDELR3O43731 214 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 NDUFS2O75306 463 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 CD160O95971 181 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 C5AR1P21730 350 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 CYLC1P35663 651 aaPredicted RBP15.35■□□□□ 0.05
CPSF1-208ENST00000532560 ARL4AP40617 200 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 ARHGAP25P42331 645 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 DPP6P42658 865 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 PTGER3P43115 390 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 PSMD8P48556 350 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 NDST2P52849 883 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 CREB5Q02930 508 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 SPEM2Q0P670 501 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 SERINC3Q13530 473 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 CSRP2Q16527 193 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 HADHQ16836 314 aaKnown RBP15.35■□□□□ 0.05
CPSF1-208ENST00000532560 POLNQ7Z5Q5 900 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 TMTC1Q8IUR5 882 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 PCDH20Q8N6Y1 951 aaKnown RBP15.35■□□□□ 0.05
CPSF1-208ENST00000532560 FOXJ1Q92949 421 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 ISG20Q96AZ6 181 aaKnown RBP15.35■□□□□ 0.05
CPSF1-208ENST00000532560 HMCESQ96FZ2 354 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 PCED1AQ9H1Q7 454 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 LRRC19Q9H756 370 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 SEMA4GQ9NTN9 838 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 PTPRZ1P23471 2315 aaPredicted RBP15.35■□□□□ 0.05
CPSF1-208ENST00000532560 SDK1Q7Z5N4 2213 aa15.35■□□□□ 0.05
CPSF1-208ENST00000532560 NUP205Q92621 2012 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 FRYLO94915 3013 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 DAPK3O43293 454 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 FOXD2O60548 495 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-208ENST00000532560 ZNF821O75541 412 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-208ENST00000532560 ZNF806P0C7X5 589 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 ERCC2P18074 760 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 HOXD12P35452 270 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 ZNF33AQ06730 810 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 SPA17Q15506 151 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 PEAR1Q5VY43 1037 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-208ENST00000532560 AFMIDQ63HM1 303 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 ARMCX6Q7L4S7 300 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 SLC41A1Q8IVJ1 513 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 LZTR1Q8N653 840 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 CADM4Q8NFZ8 388 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 OR2A12Q8NGT7 310 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 FAM71BQ8TC56 605 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 CASKIN2Q8WXE0 1202 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 TSC1Q92574 1164 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 ZNF419Q96HQ0 510 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-208ENST00000532560 HSPA12BQ96MM6 686 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 CSPG4P5Q96PW8 444 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 GPR174Q9BXC1 333 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 KLC2Q9H0B6 622 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 SGK2Q9HBY8 427 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 PCDH18Q9HCL0 1135 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 LUC7LQ9NQ29 371 aaKnown RBP15.34■□□□□ 0.05
CPSF1-208ENST00000532560 VPS45Q9NRW7 570 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 RCOR3Q9P2K3 495 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-208ENST00000532560 SERGEFQ9UGK8 458 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 PPM1HQ9ULR3 514 aa15.34■□□□□ 0.05
CPSF1-208ENST00000532560 FZD4Q9ULV1 537 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms