RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	C5AR1	P21730	350 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	PSMA2	P25787	234 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	VASP	P50552	380 aa	Predicted RBP	13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	NOVA1	P51513	510 aa	Known RBP	13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	ADPRH	P54922	357 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	PPP2CB	P62714	309 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	PPP2CA	P67775	309 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	ARF5	P84085	180 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	NRG1	Q02297	640 aa	Predicted RBP	13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	TDRD12	Q587J7	1177 aa	Known RBP	13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	FIGN	Q5HY92	759 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	EFHC2	Q5JST6	749 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	ACBD5	Q5T8D3	534 aa	Predicted RBP	13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	HGSNAT	Q68CP4	663 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	PLEKHA7	Q6IQ23	1121 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	OR2A12	Q8NGT7	310 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	OR14C36	Q8NHC7	312 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	PIP4K2C	Q8TBX8	421 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	GRIN3A	Q8TCU5	1115 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	NTAN1	Q96AB6	310 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	ZNF653	Q96CK0	615 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	PEBP4	Q96S96	227 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	ORAI3	Q9BRQ5	295 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	EDEM3	Q9BZQ6	932 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	XPO4	Q9C0E2	1151 aa	Known RBP	13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	PCED1A	Q9H1Q7	454 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	EBF2	Q9HAK2	575 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	TM9SF3	Q9HD45	589 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	PARVA	Q9NVD7	372 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	TMEM51	Q9NW97	253 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	CNOT8	Q9UFF9	292 aa	Known RBP	13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	ADAMTS1	Q9UHI8	967 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	FZD4	Q9ULV1	537 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	FZD10	Q9ULW2	581 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	SCML1	Q9UN30	329 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	KNL1	Q8NG31	2342 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	NCOR2	Q9Y618	2525 aa		13.59	□□□□□ -0.23
RNF4-215	ENST00000511843	PCNX2	A6NKB5	2137 aa		13.58	□□□□□ -0.23
RNF4-215	ENST00000511843	SHROOM3	Q8TF72	1996 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	MCF2L	O15068	1137 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	ZNF821	O75541	412 aa	Predicted RBP	13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	GYPC	P04921	128 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	SYP	P08247	313 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	ADRB1	P08588	477 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	RHOQ	P17081	205 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	GOT1	P17174	413 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	SCAP	Q12770	1279 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	CNTN1	Q12860	1018 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	CA9	Q16790	459 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	KCNT1	Q5JUK3	1230 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	ARFGAP1	Q8N6T3	406 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	NETO2	Q8NC67	525 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	RNF214	Q8ND24	703 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	VCPIP1	Q96JH7	1222 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	KLC2	Q9H0B6	622 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	NOL6	Q9H6R4	1146 aa	Known RBP	13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	TMEM248	Q9NWD8	314 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	PCSK1N	Q9UHG2	260 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	PPM1H	Q9ULR3	514 aa		13.58	□□□□□ -0.24
RNF4-215	ENST00000511843	FCF1	Q9Y324	198 aa	Known RBP	13.58	□□□□□ -0.24
RNF4-215	ENST00000511843		A0A1W2PQJ5	194 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	TMEM191C	A6NGB0	347 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	LRRC72	A6NJI9	287 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	KPNA3	O00505	521 aa	Predicted RBP	13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	KCNK3	O14649	394 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	WNT9A	O14904	365 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	OPHN1	O60890	802 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	CD160	O95971	181 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	CD27	P26842	260 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	EPHB2	P29323	1055 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	L1CAM	P32004	1257 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	CHRNA3	P32297	505 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	MAPKAPK2	P49137	400 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	SERPINH1	P50454	418 aa	Known RBP	13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	DNA2	P51530	1060 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	SEMA3B	Q13214	749 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	AGBL4	Q5VU57	503 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	ZNF783	Q6ZMS7	281 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	DPY19L3	Q6ZPD9	716 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	DSG4	Q86SJ6	1040 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	OR2T34	Q8NGX1	318 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	OR6K2	Q8NGY2	324 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	ARHGEF2	Q92974	986 aa	Known RBP	13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	ARRDC3	Q96B67	414 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	SLC6A18	Q96N87	628 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	CAMK1G	Q96NX5	476 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	ACE2	Q9BYF1	805 aa	Predicted RBP	13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	TM6SF2	Q9BZW4	377 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	CAPN11	Q9UMQ6	739 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	FNDC3A	Q9Y2H6	1198 aa	Known RBP	13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	TRPM6	Q9BX84	2022 aa		13.57	□□□□□ -0.24
RNF4-215	ENST00000511843	LRRK1	Q38SD2	2015 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	TDRD6	O60522	2096 aa	Known RBP	13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	TBC1D3D	A0A087WVF3	549 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	TBC1D3I	A0A087WXS9	549 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	TBC1D3E	A0A087X179	549 aa		13.56	□□□□□ -0.24
RNF4-215	ENST00000511843	TBC1D3K	A0A087X1G2	549 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms