RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 PDFQ9HBH1 243 aa30.23■■■□□ 2.43
LIMCH1-211ENST00000509638 SLCO3A1Q9UIG8 710 aa30.23■■■□□ 2.43
LIMCH1-211ENST00000509638 ACTL7AQ9Y615 435 aa30.23■■■□□ 2.43
LIMCH1-211ENST00000509638 STON1Q9Y6Q2 735 aa30.23■■■□□ 2.43
LIMCH1-211ENST00000509638 KMT2EQ8IZD2 1858 aa30.23■■■□□ 2.43
LIMCH1-211ENST00000509638 ZSCAN5CA6NGD5 496 aaPredicted RBP30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 APOC4-APOC2K7ER74 178 aa30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 FANCGO15287 622 aa30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 APOC2P02655 101 aa30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 MX2P20592 715 aa30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 NTSR1P30989 418 aa30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 GEMIN4P57678 1058 aaKnown RBP30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 HSF5Q4G112 596 aaPredicted RBP30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 SH2D3CQ8N5H7 860 aa30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 ZNF366Q8N895 744 aa30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 ATP11CQ8NB49 1132 aa30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 P3H4Q92791 437 aa30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 C16orf45Q96MC5 204 aaPredicted RBP30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 OLFM3Q96PB7 478 aa30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 TMEM245Q9H330 911 aa30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 SNX12Q9UMY4 172 aa30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 RAD54BQ9Y620 910 aa30.22■■■□□ 2.43
LIMCH1-211ENST00000509638 WASH3PC4AMC7 463 aa30.21■■■□□ 2.43
LIMCH1-211ENST00000509638 K7ERQ8 282 aa30.21■■■□□ 2.43
LIMCH1-211ENST00000509638 SGK1O00141 431 aa30.21■■■□□ 2.43
LIMCH1-211ENST00000509638 ADAM23O75077 832 aa30.21■■■□□ 2.43
LIMCH1-211ENST00000509638 SRCP12931 536 aa30.21■■■□□ 2.43
LIMCH1-211ENST00000509638 HLA-EP13747 358 aa30.21■■■□□ 2.43
LIMCH1-211ENST00000509638 MAGEA9P43362 315 aa30.21■■■□□ 2.43
LIMCH1-211ENST00000509638 NR2C2P49116 596 aa30.21■■■□□ 2.43
LIMCH1-211ENST00000509638 KLF1Q13351 362 aaPredicted RBP30.21■■■□□ 2.43
LIMCH1-211ENST00000509638 ENPP2Q13822 863 aa30.21■■■□□ 2.43
LIMCH1-211ENST00000509638 NYAP1Q6ZVC0 841 aa30.21■■■□□ 2.43
LIMCH1-211ENST00000509638 MMP17Q9ULZ9 603 aa30.21■■■□□ 2.43
LIMCH1-211ENST00000509638 CTAGE9A4FU28 777 aa30.2■■■□□ 2.43
LIMCH1-211ENST00000509638 CHURC1-FNTBB4DL54 471 aa30.2■■■□□ 2.43
LIMCH1-211ENST00000509638 MAFKO60675 156 aa30.2■■■□□ 2.43
LIMCH1-211ENST00000509638 NNMTP40261 264 aa30.2■■■□□ 2.43
LIMCH1-211ENST00000509638 ETF1P62495 437 aaKnown RBP30.2■■■□□ 2.43
LIMCH1-211ENST00000509638 TMEM105Q8N8V8 129 aa30.2■■■□□ 2.43
LIMCH1-211ENST00000509638 KDM1BQ8NB78 822 aa30.2■■■□□ 2.43
LIMCH1-211ENST00000509638 HDAC11Q96DB2 347 aa30.2■■■□□ 2.43
LIMCH1-211ENST00000509638 OSBPL9Q96SU4 736 aa30.2■■■□□ 2.43
LIMCH1-211ENST00000509638 UBA2Q9UBT2 640 aaPredicted RBP30.2■■■□□ 2.43
LIMCH1-211ENST00000509638 CXorf51AA0A1B0GTR3 108 aa30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 TCRBV7S2A1N4TA0A589 114 aa30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 TTC34A8MYJ7 566 aa30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 SMAD6O43541 496 aaKnown RBP30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 CEP104O60308 925 aa30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 CD160O95971 181 aa30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 VASPP50552 380 aaPredicted RBP30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 IL10RBQ08334 325 aa30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 MTAPQ13126 283 aa30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 SDE2Q6IQ49 451 aa30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 SLC13A5Q86YT5 568 aaPredicted RBP30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 LRRC49Q8IUZ0 686 aa30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 LRRN4Q8WUT4 740 aa30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 GABRG3Q99928 467 aa30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 IER2Q9BTL4 223 aa30.2■■■□□ 2.42
LIMCH1-211ENST00000509638 PPP1R12AO14974 1030 aaPredicted RBP30.19■■■□□ 2.42
LIMCH1-211ENST00000509638 ATG13O75143 517 aa30.19■■■□□ 2.42
LIMCH1-211ENST00000509638 HOXB2P14652 356 aa30.19■■■□□ 2.42
LIMCH1-211ENST00000509638 CLCN6P51797 869 aa30.19■■■□□ 2.42
LIMCH1-211ENST00000509638 PDK1Q15118 436 aa30.19■■■□□ 2.42
LIMCH1-211ENST00000509638 EOGTQ5NDL2 527 aa30.19■■■□□ 2.42
LIMCH1-211ENST00000509638 LGMNQ99538 433 aa30.19■■■□□ 2.42
LIMCH1-211ENST00000509638 POLR3BQ9NW08 1133 aaPredicted RBP30.19■■■□□ 2.42
LIMCH1-211ENST00000509638 FCF1Q9Y324 198 aaKnown RBP30.19■■■□□ 2.42
LIMCH1-211ENST00000509638 ATP9BO43861 1147 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 TMCC1O94876 653 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 EPHX1P07099 455 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 OTUD4Q01804 1114 aaKnown RBP30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 SLC20A2Q08357 652 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 ACCSLQ4AC99 568 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 C22orf39Q6P5X5 142 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 BZW1Q7L1Q6 419 aaKnown RBP30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 ADAT2Q7Z6V5 191 aaKnown RBP30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 ZSCAN30Q86W11 494 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 SPEM1Q8N4L4 309 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 CCNYQ8ND76 341 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 ACTL9Q8TC94 416 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 ERLEC1Q96DZ1 483 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 PBKQ96KB5 322 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 FAM118BQ9BPY3 351 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 C2orf42Q9NWW7 574 aa30.18■■■□□ 2.42
LIMCH1-211ENST00000509638 NOMO1Q15155 1222 aa30.17■■■□□ 2.42
LIMCH1-211ENST00000509638 DLG2Q15700 870 aa30.17■■■□□ 2.42
LIMCH1-211ENST00000509638 HNRNPA1L2Q32P51 320 aaKnown RBP30.17■■■□□ 2.42
LIMCH1-211ENST00000509638 SYT10Q6XYQ8 523 aa30.17■■■□□ 2.42
LIMCH1-211ENST00000509638 COG1Q8WTW3 980 aa30.17■■■□□ 2.42
LIMCH1-211ENST00000509638 FRS2Q8WU20 508 aa30.17■■■□□ 2.42
LIMCH1-211ENST00000509638 MTG2Q9H4K7 406 aa30.17■■■□□ 2.42
LIMCH1-211ENST00000509638 SLC8A2Q9UPR5 921 aa30.17■■■□□ 2.42
LIMCH1-211ENST00000509638 FGGP02679 453 aa30.16■■■□□ 2.42
LIMCH1-211ENST00000509638 VAV1P15498 845 aa30.16■■■□□ 2.42
LIMCH1-211ENST00000509638 PPIDQ08752 370 aaKnown RBP30.16■■■□□ 2.42
LIMCH1-211ENST00000509638 TMCO4Q5TGY1 634 aa30.16■■■□□ 2.42
LIMCH1-211ENST00000509638 Q6ZVU0 165 aa30.16■■■□□ 2.42
LIMCH1-211ENST00000509638 SYT13Q7L8C5 426 aa30.16■■■□□ 2.42
LIMCH1-211ENST00000509638 ZC3H18Q86VM9 953 aaKnown RBP30.16■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms