RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 FAM234BA2RU67 622 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 HOXB9P17482 250 aaPredicted RBP3.05□□□□□ -1.92
NUP54-208ENST00000508604 RFC1P35251 1148 aaPredicted RBP3.05□□□□□ -1.92
NUP54-208ENST00000508604 STT3AP46977 705 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 BNC1Q01954 994 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 ST3GAL1Q11201 340 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 HDAC1Q13547 482 aaPredicted RBP3.05□□□□□ -1.92
NUP54-208ENST00000508604 ARL6IP4Q66PJ3 421 aaKnown RBP3.05□□□□□ -1.92
NUP54-208ENST00000508604 TYW3Q6IPR3 259 aaKnown RBP3.05□□□□□ -1.92
NUP54-208ENST00000508604 ZDHHC23Q8IYP9 409 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 MYO1HQ8N1T3 1032 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 MAB21L3Q8N8X9 362 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 SPATA20Q8TB22 786 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 NEK9Q8TD19 979 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 SECTM1Q8WVN6 248 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 TTC17Q96AE7 1141 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 EPS8L2Q9H6S3 715 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 RAI2Q9Y5P3 530 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 WDR81Q562E7 1941 aa3.05□□□□□ -1.92
NUP54-208ENST00000508604 KIF1CO43896 1103 aaKnown RBP3.04□□□□□ -1.92
NUP54-208ENST00000508604 NTSR2O95665 410 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 PAK4O96013 591 aaPredicted RBP3.04□□□□□ -1.92
NUP54-208ENST00000508604 PEPDP12955 493 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 TSHRP16473 764 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 DGKAP23743 735 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 ARL16Q0P5N6 197 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 TROAPQ12815 778 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 ILF3Q12906 894 aaKnown RBP eCLIP3.04□□□□□ -1.925e-6■■□□□ 11.7
NUP54-208ENST00000508604 MYBPHQ13203 477 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 UNQ6126/PRO20091Q6UXV3 157 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 NEK10Q6ZWH5 1172 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 ZNF771Q7L3S4 317 aaPredicted RBP3.04□□□□□ -1.92
NUP54-208ENST00000508604 RNF152Q8N8N0 203 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 ENDOVQ8N8Q3 282 aaKnown RBP3.04□□□□□ -1.92
NUP54-208ENST00000508604 WDSUB1Q8N9V3 476 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 FAM110DQ8TAY7 271 aaPredicted RBP3.04□□□□□ -1.92
NUP54-208ENST00000508604 TAF15Q92804 592 aaKnown RBP eCLIP3.04□□□□□ -1.92
NUP54-208ENST00000508604 MCRS1Q96EZ8 462 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 IFT27Q9BW83 186 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 GAREM1Q9H706 876 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 PKP3Q9Y446 797 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 KDM4EB2RXH2 506 aaPredicted RBP3.04□□□□□ -1.92
NUP54-208ENST00000508604 PRAC2D3DTV9 90 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 HSPB6O14558 160 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 RNMTO43148 476 aaKnown RBP3.04□□□□□ -1.92
NUP54-208ENST00000508604 ANXA6P08133 673 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 PRKCHP24723 683 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 CLCNKBP51801 687 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 ALDH18A1P54886 795 aaKnown RBP3.04□□□□□ -1.92
NUP54-208ENST00000508604 ZBTB16Q05516 673 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 GRM4Q14833 912 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 ZACNQ401N2 412 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 ACCSLQ4AC99 568 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 RINT1Q6NUQ1 792 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 ZNF485Q8NCK3 441 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 MTBPQ96DY7 904 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 FRMD8Q9BZ67 464 aaPredicted RBP3.04□□□□□ -1.92
NUP54-208ENST00000508604 EGLN1Q9GZT9 426 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 MMP28Q9H239 520 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 EVA1AQ9H8M9 152 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 SEL1LQ9UBV2 794 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 THRAP3Q9Y2W1 955 aaKnown RBP3.04□□□□□ -1.92
NUP54-208ENST00000508604 CEP83Q9Y592 693 aa3.04□□□□□ -1.92
NUP54-208ENST00000508604 A0A0U1RQJ8 604 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 A0A1B0GVM2 712 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 FAM172BPA6NC97 362 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 XPNPEP2O43895 674 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 GSTM2P28161 218 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 DLG1Q12959 904 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 IFIT5Q13325 482 aaKnown RBP3.03□□□□□ -1.92
NUP54-208ENST00000508604 XKR9Q5GH70 373 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 ZNF772Q68DY9 489 aaPredicted RBP3.03□□□□□ -1.92
NUP54-208ENST00000508604 NCAPH2Q6IBW4 605 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 RAVER1Q8IY67 606 aaKnown RBP3.03□□□□□ -1.92
NUP54-208ENST00000508604 NRSN1Q8IZ57 195 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 LRRC8CQ8TDW0 803 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 ZNF385AQ96PM9 386 aaKnown RBP3.03□□□□□ -1.92
NUP54-208ENST00000508604 C1QTNF5Q9BXJ0 243 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.03□□□□□ -1.92
NUP54-208ENST00000508604 NECTIN3Q9NQS3 549 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 SLC52A1Q9NWF4 448 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 GAB2Q9UQC2 676 aa3.03□□□□□ -1.92
NUP54-208ENST00000508604 IGKV3D-20A0A0C4DH25 116 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 TULP2O00295 520 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 LARGE1O95461 756 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 TBX6O95947 436 aaPredicted RBP3.02□□□□□ -1.93
NUP54-208ENST00000508604 CRYAAP02489 173 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 S100BP04271 92 aaPredicted RBP3.02□□□□□ -1.93
NUP54-208ENST00000508604 AKT1P31749 480 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 PCP4P48539 62 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 MXI1P50539 228 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 CASP5P51878 434 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 ATP12AP54707 1039 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 MYBPC2Q14324 1141 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 RBBP5Q15291 538 aaKnown RBP3.02□□□□□ -1.93
NUP54-208ENST00000508604 TUBA1AQ71U36 451 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 PATL1Q86TB9 770 aaKnown RBP3.02□□□□□ -1.93
NUP54-208ENST00000508604 SERPINA11Q86U17 422 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 TEX45Q8NA69 505 aa3.02□□□□□ -1.93
NUP54-208ENST00000508604 ZNF566Q969W8 418 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms