RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 DPCR1Q3MIW9 517 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 NEK5Q6P3R8 708 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 DHRS13Q6UX07 377 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 PRPF39Q86UA1 669 aaKnown RBP12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 PDCD7Q8N8D1 485 aaKnown RBP12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TMEM35BQ8NCS4 154 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 VOPP1Q96AW1 172 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 HAPLN3Q96S86 360 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TBCBQ99426 244 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TMPRSS4Q9NRS4 437 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 FTSJ1Q9UET6 329 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 VPS51Q9UID3 782 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SLC25A13Q9UJS0 675 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SNX10Q9Y5X0 201 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 FHOD1Q9Y613 1164 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 BPTFQ12830 3046 aa12.56□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 PTPRQQ9UMZ3 2332 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 FAM149AA5PLN7 773 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 GOLGA8CPA6NN73 597 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CBX4O00257 560 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 RNGTTO60942 597 aaKnown RBP12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 LDOC1O95751 146 aaPredicted RBP12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ITGAVP06756 1048 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 UCHL3P15374 230 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ACADVLP49748 655 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CLCN6P51797 869 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 KRT83P78385 493 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CYP4F3Q08477 520 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ACCSLQ4AC99 568 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CT47A1Q5JQC4 288 aaPredicted RBP12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 NOP9Q86U38 636 aaKnown RBP12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 FAM114A1Q8IWE2 563 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CACTIN-AS1Q8N1I8 211 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 OXR1Q8N573 874 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 DCAF4L2Q8NA75 395 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 C2orf49Q9BVC5 232 aaPredicted RBP12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 STK33Q9BYT3 514 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 PREBQ9HCU5 417 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SCUBE2Q9NQ36 999 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SAMSN1Q9NSI8 373 aaKnown RBP12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 MPP6Q9NZW5 540 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 STAP1Q9ULZ2 295 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 RAXQ9Y2V3 346 aa12.55□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 A0A087WV48 116 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CXorf51AA0A1B0GTR3 108 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ILVBLA1L0T0 632 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 C1QTNF3-AMACRE9PGA6 284 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 PRAMEF26H0Y7S4 382 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 LSM8O95777 96 aaKnown RBP12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CD160O95971 181 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 RRM1P23921 792 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 MAT2AP31153 395 aaKnown RBP12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CHRNA3P32297 505 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ARRB1P49407 418 aaPredicted RBP12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SULT1E1P49888 294 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 RNASE9P60153 205 aaKnown RBP12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 NOMO3P69849 1222 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 DEUP1Q05D60 604 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 DNAJC3Q13217 504 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ZNF284Q2VY69 593 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SLC45A4Q5BKX6 768 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 FBXL19Q6PCT2 694 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ZNF783Q6ZMS7 281 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ERICH1Q86X53 443 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SLC25A45Q8N413 288 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 EID2Q8N6I1 236 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CHST14Q8NCH0 376 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 EPS8L1Q8TE68 723 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 RFFLQ8WZ73 363 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ARRDC3Q96B67 414 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CNDP2Q96KP4 475 aaKnown RBP12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 HDAC8Q9BY41 377 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 MUC3BQ9H195 1237 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SYNCQ9H7C4 482 aa12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 PPARGC1AQ9UBK2 798 aaKnown RBP12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ZFR2Q9UPR6 939 aaKnown RBP12.54□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 F8VZ95 297 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 MAGEC1O60732 1142 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CYP1A1P04798 512 aaPredicted RBP12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 RHOCP08134 193 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 MMEP08473 750 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 GIMD1P0DJR0 217 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 GLDCP23378 1020 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 NRG1Q02297 640 aaPredicted RBP12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SLC20A2Q08357 652 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 ILKQ13418 452 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 STAT4Q14765 748 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TPD52L1Q16890 204 aaPredicted RBP12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 COL28A1Q2UY09 1125 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 PROX2Q3B8N5 592 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 POM121L1PQ3SYA9 428 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TMEM259Q4ZIN3 620 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 SETMARQ53H47 684 aaPredicted RBP12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 C2CD6Q53TS8 623 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 TCP11X2Q5H9J9 407 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 FAM102AQ5T9C2 384 aaPredicted RBP12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 MANEALQ5VSG8 457 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 C19orf48Q6RUI8 117 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 LRRC31Q6UY01 552 aa12.53□□□□□ -0.4
MSH5-SAPCD1-205ENST00000476085 CLEC17AQ6ZS10 378 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms