RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ATP11CQ8NB49 1132 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 CCDC114Q96M63 670 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 CFAP57Q96MR6 1250 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 HAPLN3Q96S86 360 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 VPS16Q9H269 839 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 MPP6Q9NZW5 540 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 FTSJ1Q9UET6 329 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 NOCTQ9UK39 431 aaKnown RBP16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 DMTF1Q9Y222 760 aa16.98■□□□□ 0.31
CCDC28B-204ENST00000469003 TPM2P07951 284 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 OR1E1P30953 314 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 CLCN6P51797 869 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 NXPH1P58417 271 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 KRT31Q15323 416 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 SHBQ15464 509 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 POM121L1PQ3SYA9 428 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 ARTNQ5T4W7 220 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 ZNF783Q6ZMS7 281 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 TFAP2DQ7Z6R9 452 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 PROSER1Q86XN7 944 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 GATAD2AQ86YP4 633 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 MFSD2AQ8NA29 543 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 OR2A12Q8NGT7 310 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 SAP25Q8TEE9 199 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 SLC20A1Q8WUM9 679 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 ERVMER34-1Q9H9K5 563 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 PREBQ9HCU5 417 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 METTL5Q9NRN9 209 aaKnown RBP16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 DAAM1Q9Y4D1 1078 aa16.97■□□□□ 0.31
CCDC28B-204ENST00000469003 A0A0D9SEW6 157 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 ILVBLA1L0T0 632 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 K7ERQ8 282 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 TAF4O00268 1085 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 MAGEC1O60732 1142 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 SRGAP2O75044 1071 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 GFPT2O94808 682 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 ENDOD1O94919 500 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 CYP1A1P04798 512 aaPredicted RBP16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 ITGAVP06756 1048 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 CTSLP07711 333 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 RRM1P23921 792 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 MAT2AP31153 395 aaKnown RBP16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 CHRNA3P32297 505 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 ARRB1P49407 418 aaPredicted RBP16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 POLR2FP61218 127 aaKnown RBP16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 FMO1Q01740 532 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 CDR2Q01850 454 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 CCDC15Q0P6D6 951 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 OVGP1Q12889 678 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 SETMARQ53H47 684 aaPredicted RBP16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 PIP5KL1Q5T9C9 394 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 IQCHQ86VS3 1027 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 FAM131BQ86XD5 332 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 GALNT15Q8N3T1 639 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 OXR1Q8N573 874 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 TMIEQ8NEW7 156 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 ZYG11BQ9C0D3 744 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 ZNF212Q9UDV6 495 aa16.96■□□□□ 0.31
CCDC28B-204ENST00000469003 FREM2Q5SZK8 3169 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 DOCK9Q9BZ29 2069 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 SMAD6O43541 496 aaKnown RBP16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 PRNPP04156 253 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 MMP8P22894 467 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 EPHA8P29322 1005 aaPredicted RBP16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 SOX5P35711 763 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 RXRGP48443 463 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 KLK7P49862 253 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 JAM2P57087 298 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 TAS2R38P59533 333 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 STAT4Q14765 748 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 FKBP15Q5T1M5 1219 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 NEK5Q6P3R8 708 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 C22orf39Q6P5X5 142 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 LINGO4Q6UY18 593 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 RBM43Q6ZSC3 357 aaKnown RBP16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 EMC1Q8N766 993 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 OR7D4Q8NG98 312 aa16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 CCDC86Q9H6F5 360 aaKnown RBP16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 FAM207AQ9NSI2 230 aaPredicted RBP16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 PPARGC1AQ9UBK2 798 aaKnown RBP16.95■□□□□ 0.3
CCDC28B-204ENST00000469003 PRAMEF26H0Y7S4 382 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 KPNA3O00505 521 aaPredicted RBP16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 ENC1O14682 589 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 EPHB6O15197 1021 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 RNGTTO60942 597 aaKnown RBP16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 LDOC1O95751 146 aaPredicted RBP16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 CHRNB2P17787 502 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 GLDCP23378 1020 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 ATP11AP98196 1134 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 SMAD1Q15797 465 aaKnown RBP16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 RETSATQ6NUM9 610 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 TRIM72Q6ZMU5 477 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 SPATS2Q86XZ4 545 aaKnown RBP16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 CHST14Q8NCH0 376 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 ARRDC3Q96B67 414 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 SPON2Q9BUD6 331 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 ATP13A1Q9HD20 1204 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 NLRC4Q9NPP4 1024 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 DYRK4Q9NR20 520 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 SIK3Q9Y2K2 1263 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms