RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 CDH9Q9ULB4 789 aa4.29□□□□□ -1.72
TMEM39A-204ENST00000468545 GUCA1BQ9UMX6 200 aa4.29□□□□□ -1.72
TMEM39A-204ENST00000468545 STXBP5LQ9Y2K9 1186 aa4.29□□□□□ -1.72
TMEM39A-204ENST00000468545 PPP2R2CQ9Y2T4 447 aa4.29□□□□□ -1.72
TMEM39A-204ENST00000468545 PAXBP1Q9Y5B6 917 aa4.29□□□□□ -1.72
TMEM39A-204ENST00000468545 ALPK3Q96L96 1907 aa4.29□□□□□ -1.72
TMEM39A-204ENST00000468545 SF3B1O75533 1304 aaKnown RBP eCLIP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 SCN1AP35498 2009 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 USP27XA6NNY8 438 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 TMEM110-MUSTN1A8MSY1 372 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 EIF3CLB5ME19 914 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 GOLGA8SH3BPF8 625 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 TMEM189-UBE2V1I3L0A0 370 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 GABRDO14764 452 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ZNF263O14978 683 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 SYN3O14994 580 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ZSCAN12O43309 604 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 TGM5O43548 720 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 BUB1O43683 1085 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 NUAK1O60285 661 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 LPXNO60711 386 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 RTN2O75298 545 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 CYP7B1O75881 506 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 FGF18O76093 207 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 CA3P07451 260 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 H2AFZP0C0S5 128 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 CCDC175P0C221 793 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 FAM163BP0C2L3 166 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 SPATA31D3P0C874 917 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 BDNFP23560 247 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 PAX3P23760 479 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 PTX3P26022 381 aaPredicted RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 PCSK1P29120 753 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 MC4RP32245 332 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 OR1D2P34982 312 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 BMPR1AP36894 532 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 NSFP46459 744 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 AARSP49588 968 aaKnown RBP eCLIP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ZNF132P52740 706 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 GALCP54803 685 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 MAP3K7CLP57077 242 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 RNASE9P60153 205 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 PHC1P78364 1004 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 HTRA4P83105 476 aaPredicted RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 DLX2Q07687 328 aaPredicted RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 INCA1Q0VD86 236 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ELAVL2Q12926 359 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 SMAD4Q13485 552 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 CNGA2Q16280 664 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 PSMD5Q16401 504 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 SLC18A3Q16572 532 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ASTE1Q2TB18 679 aaPredicted RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 USP41Q3LFD5 358 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ATP13A4Q4VNC1 1196 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 HS1BP3Q53T59 392 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 GPR158Q5T848 1215 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 CYP4A22Q5TCH4 519 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 LIN9Q5TKA1 542 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 SDHAF4Q5VUM1 108 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 OR6B2Q6IFH4 312 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ACAD10Q6JQN1 1059 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ZNF280DQ6N043 979 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ESRP1Q6NXG1 681 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 MMS22LQ6ZRQ5 1243 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 SPATA31D4Q6ZUB0 917 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 H2AFVQ71UI9 128 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 STK32CQ86UX6 486 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ZSCAN30Q86W11 494 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ZNF677Q86XU0 584 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 PALB2Q86YC2 1186 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 SPATA2LQ8IUW3 424 aaPredicted RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 TMEM151BQ8IW70 566 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 SCN4BQ8IWT1 228 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ZZZ3Q8IYH5 903 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 DCP1BQ8IZD4 617 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 VPS52Q8N1B4 723 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 CRYBG2Q8N1P7 616 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 SLC39A11Q8N1S5 342 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 WDTC1Q8N5D0 677 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 B3GALNT2Q8NCR0 500 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 TMEM35BQ8NCS4 154 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 C1orf131Q8NDD1 294 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 OR10T2Q8NGX3 314 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 SECISBP2LQ93073 1101 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 MYLPFQ96A32 169 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 E2F7Q96AV8 911 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 DACT3Q96B18 629 aaPredicted RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 FAXDC2Q96IV6 333 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 C16orf92Q96LL3 132 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 EIF3CQ99613 913 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 FOXB1Q99853 325 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 RTP3Q9BQQ7 232 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ACBD6Q9BR61 282 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 C11orf70Q9BRQ4 267 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 VN1R3Q9BXE9 311 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 FAM126AQ9BYI3 521 aaPredicted RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 RHOBTB2Q9BYZ6 727 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 MIS12Q9H081 205 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms