RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 RNPC3Q96LT9 517 aaKnown RBP5.69□□□□□ -1.5
VPS41-211ENST00000466017 FCRL3Q96P31 734 aaPredicted RBP5.69□□□□□ -1.5
VPS41-211ENST00000466017 CDK5RAP1Q96SZ6 601 aaKnown RBP5.69□□□□□ -1.5
VPS41-211ENST00000466017 RHOBTB2Q9BYZ6 727 aa5.69□□□□□ -1.5
VPS41-211ENST00000466017 FRMD8P1Q9BZ68 369 aaPredicted RBP5.69□□□□□ -1.5
VPS41-211ENST00000466017 TRIM7Q9C029 511 aa5.69□□□□□ -1.5
VPS41-211ENST00000466017 KLHL25Q9H0H3 589 aa5.69□□□□□ -1.5
VPS41-211ENST00000466017 PLEKHA4Q9H4M7 779 aa5.69□□□□□ -1.5
VPS41-211ENST00000466017 RETREG1Q9H6L5 497 aa5.69□□□□□ -1.5
VPS41-211ENST00000466017 NOL6Q9H6R4 1146 aaKnown RBP5.69□□□□□ -1.5
VPS41-211ENST00000466017 CCSER2Q9H7U1 834 aa5.69□□□□□ -1.5
VPS41-211ENST00000466017 HOMER3Q9NSC5 361 aa5.69□□□□□ -1.5
VPS41-211ENST00000466017 OLA1Q9NTK5 396 aaKnown RBP5.69□□□□□ -1.5
VPS41-211ENST00000466017 RCOR3Q9P2K3 495 aaPredicted RBP5.69□□□□□ -1.5
VPS41-211ENST00000466017 DPP7Q9UHL4 492 aa5.69□□□□□ -1.5
VPS41-211ENST00000466017 USP18Q9UMW8 372 aa5.69□□□□□ -1.5
VPS41-211ENST00000466017 A0A1W2PPC1 479 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 LCHNA4D1U4 455 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 CTAGE15A4D2H0 777 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 C2orf71A6NGG8 1288 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 SLC38A8A6NNN8 435 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 YJEFN3A6XGL0 299 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 B2RBV5 119 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 E7ENQ6 273 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 KCNK3O14649 394 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 TEX28O15482 410 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 ADAM12O43184 909 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 NCK2O43639 380 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 SEC24AO95486 1093 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 CNPP09543 421 aaKnown RBP5.68□□□□□ -1.5
VPS41-211ENST00000466017 OR4Q2P0C623 313 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 MSL3P1P0C860 447 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 CTAGE8P0CG41 777 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 PYGMP11217 842 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 RALAP11233 206 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 HMGA1P17096 107 aaKnown RBP5.68□□□□□ -1.5
VPS41-211ENST00000466017 KDELR1P24390 212 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 HTR7P34969 479 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 RDXP35241 583 aaKnown RBP5.68□□□□□ -1.5
VPS41-211ENST00000466017 ALDH1A3P47895 512 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 HCAR3P49019 387 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 CXCR3P49682 368 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 TUBP50607 506 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 KPNA1P52294 538 aaPredicted RBP5.68□□□□□ -1.5
VPS41-211ENST00000466017 HDAC4P56524 1084 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 TAS2R40P59535 323 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 YWHAGP61981 247 aaKnown RBP eCLIP5.68□□□□□ -1.5
VPS41-211ENST00000466017 SLC25A11Q02978 314 aaKnown RBP5.68□□□□□ -1.5
VPS41-211ENST00000466017 SCAPQ12770 1279 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 CAMK1Q14012 370 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 NR0B2Q15466 257 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 TAF5Q15542 800 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 DPYSL2Q16555 572 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 CYP1B1Q16678 543 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 DDR2Q16832 855 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 CCDC142Q17RM4 750 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 MGAT5BQ3V5L5 792 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 GLE1Q53GS7 698 aaKnown RBP5.68□□□□□ -1.5
VPS41-211ENST00000466017 BRMS1LQ5PSV4 323 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 ERMARDQ5T6L9 678 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 SYPL2Q5VXT5 272 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 BTBD8Q5XKL5 378 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 DRICH1Q6PGQ1 229 aaPredicted RBP5.68□□□□□ -1.5
VPS41-211ENST00000466017 CEP128Q6ZU80 1094 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 CCDC149Q6ZUS6 474 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 RSRC2Q7L4I2 434 aaKnown RBP5.68□□□□□ -1.5
VPS41-211ENST00000466017 GPRIN1Q7Z2K8 1008 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 PHLDB2Q86SQ0 1253 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 TADA2BQ86TJ2 420 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 CTAGE6Q86UF2 777 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 ITIH5Q86UX2 942 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 SLC13A5Q86YT5 568 aaPredicted RBP5.68□□□□□ -1.5
VPS41-211ENST00000466017 MAP7D3Q8IWC1 876 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 SCN4BQ8IWT1 228 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 CTAGE4Q8IX94 777 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 EMC1Q8N766 993 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 SPATA4Q8NEY3 305 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 MYRIPQ8NFW9 859 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 COG1Q8WTW3 980 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 SLC22A17Q8WUG5 538 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 ALG3Q92685 438 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 KRT35Q92764 455 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 PSMG2Q969U7 264 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 AZIN2Q96A70 460 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 FAM149B1Q96BN6 582 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 FAF2Q96CS3 445 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 SLC39A13Q96H72 371 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 PIWIL1Q96J94 861 aaKnown RBP5.68□□□□□ -1.5
VPS41-211ENST00000466017 SEC16BQ96JE7 1060 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 C1orf74Q96LT6 269 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 RUNDC3BQ96NL0 473 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 HAPLN3Q96S86 360 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 CDADC1Q9BWV3 514 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 OSBPL2Q9H1P3 480 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 PRO3102Q9H379 93 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 GOLPH3Q9H4A6 298 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 WDR6Q9NNW5 1121 aaKnown RBP5.68□□□□□ -1.5
VPS41-211ENST00000466017 TLR9Q9NR96 1032 aa5.68□□□□□ -1.5
VPS41-211ENST00000466017 TLR8Q9NR97 1041 aaKnown RBP5.68□□□□□ -1.5
VPS41-211ENST00000466017 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms