RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 SPEM2Q0P670 501 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 DPYSL2Q16555 572 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 RAD9BQ6WBX8 426 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 TEKT4Q8WW24 435 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 OR8D1Q8WZ84 308 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 HMCESQ96FZ2 354 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 TOE1Q96GM8 510 aaKnown RBP19.06■□□□□ 0.64
SHH-204ENST00000441114 BAG1Q99933 345 aaPredicted RBP19.06■□□□□ 0.64
SHH-204ENST00000441114 KLC2Q9H0B6 622 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 PCDH18Q9HCL0 1135 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 KLHL11Q9NVR0 708 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 FCF1Q9Y324 198 aaKnown RBP19.06■□□□□ 0.64
SHH-204ENST00000441114 SDK1Q7Z5N4 2213 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 MID1O15344 667 aa19.05■□□□□ 0.64
SHH-204ENST00000441114 BUB1O43683 1085 aa19.05■□□□□ 0.64
SHH-204ENST00000441114 KDELR3O43731 214 aa19.05■□□□□ 0.64
SHH-204ENST00000441114 FECHP22830 423 aa19.05■□□□□ 0.64
SHH-204ENST00000441114 HOXD11P31277 338 aaPredicted RBP19.05■□□□□ 0.64
SHH-204ENST00000441114 SLC8A1P32418 973 aa19.05■□□□□ 0.64
SHH-204ENST00000441114 SERPINH1P50454 418 aaKnown RBP19.05■□□□□ 0.64
SHH-204ENST00000441114 YBEYP58557 167 aaPredicted RBP19.05■□□□□ 0.64
SHH-204ENST00000441114 CST6Q15828 149 aa19.05■□□□□ 0.64
SHH-204ENST00000441114 TTC31Q49AM3 519 aaPredicted RBP19.05■□□□□ 0.64
SHH-204ENST00000441114 C22orf39Q6P5X5 142 aa19.05■□□□□ 0.64
SHH-204ENST00000441114 UMODL1-AS1Q8N2C9 162 aa19.05■□□□□ 0.64
SHH-204ENST00000441114 GPR174Q9BXC1 333 aa19.05■□□□□ 0.64
SHH-204ENST00000441114 SLC39A8Q9C0K1 460 aa19.05■□□□□ 0.64
SHH-204ENST00000441114 LUC7LQ9NQ29 371 aaKnown RBP19.05■□□□□ 0.64
SHH-204ENST00000441114 DONSONQ9NYP3 566 aa19.05■□□□□ 0.64
SHH-204ENST00000441114 WSB2Q9NYS7 404 aaPredicted RBP19.05■□□□□ 0.64
SHH-204ENST00000441114 LCMT1Q9UIC8 334 aa19.05■□□□□ 0.64
SHH-204ENST00000441114 VPS13AQ96RL7 3174 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 MTA2O94776 668 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 EPN2O95208 641 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 IPO7O95373 1038 aaKnown RBP19.04■□□□□ 0.64
SHH-204ENST00000441114 TNNT1P13805 278 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 OXTRP30559 389 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 ARHGAP25P42331 645 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 PTGER3P43115 390 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 HCAR3P49019 387 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 CLCN6P51797 869 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 ZNF135P52742 658 aaPredicted RBP19.04■□□□□ 0.64
SHH-204ENST00000441114 SLC20A2Q08357 652 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 MMRN1Q13201 1228 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 ELAVL3Q14576 367 aaKnown RBP19.04■□□□□ 0.64
SHH-204ENST00000441114 POM121L1PQ3SYA9 428 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 POLNQ7Z5Q5 900 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 KCTD6Q8NC69 237 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 LOXL4Q96JB6 756 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 CCDC114Q96M63 670 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 OMDQ99983 421 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 PABPC3Q9H361 631 aaKnown RBP19.04■□□□□ 0.64
SHH-204ENST00000441114 NCKAP1Q9Y2A7 1128 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 MFHAS1Q9Y4C4 1052 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 FARP1Q9Y4F1 1045 aaPredicted RBP19.04■□□□□ 0.64
SHH-204ENST00000441114 HYOU1Q9Y4L1 999 aa19.04■□□□□ 0.64
SHH-204ENST00000441114 TNRC6BQ9UPQ9 1833 aaKnown RBP19.04■□□□□ 0.64
SHH-204ENST00000441114 A0A1W2PP55 124 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 DFFAO00273 331 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 RNASEH2AO75792 299 aaKnown RBP19.03■□□□□ 0.64
SHH-204ENST00000441114 CD160O95971 181 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 CD48P09326 243 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 MAN1A1P33908 653 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 RECQLP46063 649 aaPredicted RBP19.03■□□□□ 0.64
SHH-204ENST00000441114 PAPOLAP51003 745 aaKnown RBP19.03■□□□□ 0.64
SHH-204ENST00000441114 NDST2P52849 883 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 ZBTB16Q05516 673 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 SERINC3Q13530 473 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 DPYSQ14117 519 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 PARP15Q460N3 678 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 CYP2U1Q7Z449 544 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 DSG4Q86SJ6 1040 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 KIAA2013Q8IYS2 634 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 RYBPQ8N488 228 aaPredicted RBP19.03■□□□□ 0.64
SHH-204ENST00000441114 HDDC3Q8N4P3 179 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 ACRBPQ8NEB7 543 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 PIGKQ92643 395 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 CSPG4P5Q96PW8 444 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 CALN1Q9BXU9 219 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 TM6SF2Q9BZW4 377 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 SMOC1Q9H4F8 434 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 LRRC19Q9H756 370 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 FBXL12Q9NXK8 326 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 SARDHQ9UL12 918 aa19.03■□□□□ 0.64
SHH-204ENST00000441114 ZFHX2Q9C0A1 2572 aaPredicted RBP19.03■□□□□ 0.64
SHH-204ENST00000441114 ATXN2Q99700 1313 aaKnown RBP19.02■□□□□ 0.64
SHH-204ENST00000441114 ARHGAP42A6NI28 874 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 PLK4O00444 970 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 MCF2LO15068 1137 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 KRT7P08729 469 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 ACSL1P33121 698 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 METAP1P53582 386 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 GEMIN4P57678 1058 aaKnown RBP19.02■□□□□ 0.64
SHH-204ENST00000441114 ZNF33AQ06730 810 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 LYSMD4Q5XG99 296 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 TMEM139Q8IV31 216 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 TP53INP2Q8IXH6 220 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 NPWQ8N729 165 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 CHST14Q8NCH0 376 aa19.02■□□□□ 0.64
SHH-204ENST00000441114 OR2A12Q8NGT7 310 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms