RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 PDHA1P08559 390 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 SELPP16109 830 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 NCF2P19878 526 aaPredicted RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 TPSB2P20231 275 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 RPL9P32969 192 aaKnown RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 CRHR1P34998 444 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 SLC25A3Q00325 362 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 OCRLQ01968 901 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 TPSAB1Q15661 275 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 PCSK7Q16549 785 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 ACSBG2Q5FVE4 666 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 TMEM173Q86WV6 379 aaPredicted RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 CRLF3Q8IUI8 442 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 ATAD1Q8NBU5 361 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 RBM15BQ8NDT2 890 aaKnown RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 SGF29Q96ES7 293 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 PTCD3Q96EY7 689 aaKnown RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 CERS2Q96G23 380 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 RAB3IPQ96QF0 476 aaPredicted RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 OMDQ99983 421 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 CYP4F11Q9HBI6 524 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 C20orf96Q9NUD7 363 aaPredicted RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 NOP53Q9NZM5 478 aaKnown RBP9.66□□□□□ -0.86
CUX1-206ENST00000437600 SLC39A10Q9ULF5 831 aa9.66□□□□□ -0.86
CUX1-206ENST00000437600 PRRC2BQ5JSZ5 2229 aaKnown RBP9.65□□□□□ -0.86
CUX1-206ENST00000437600 ARHGAP42A6NI28 874 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 HHLA1C9JL84 531 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 CCDC22O60826 627 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 DAB1O75553 588 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 STK10O94804 968 aaKnown RBP9.65□□□□□ -0.86
CUX1-206ENST00000437600 ACRP10323 421 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 MSX2P35548 267 aaPredicted RBP9.65□□□□□ -0.86
CUX1-206ENST00000437600 MAGEA6P43360 314 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 CHRNA4P43681 627 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 SLC1A6P48664 564 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 RPL34P49207 117 aaKnown RBP9.65□□□□□ -0.86
CUX1-206ENST00000437600 AP1ARQ63HQ0 302 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 NAPRTQ6XQN6 538 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 TFAP2DQ7Z6R9 452 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 CHSY1Q86X52 802 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 DENND6AQ8IWF6 608 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 IPMKQ8NFU5 416 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 FAM161BQ96MY7 647 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 FAM193BQ96PV7 902 aaPredicted RBP9.65□□□□□ -0.86
CUX1-206ENST00000437600 TMEM39AQ9NV64 488 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 SIRPGQ9P1W8 387 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 ZNF180Q9UJW8 692 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 SLC27A5Q9Y2P5 690 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 ANKRD33BA6NCL7 494 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 OPHN1O60890 802 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 TPBGLP0DKB5 382 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 PTDSS1P48651 473 aaKnown RBP9.65□□□□□ -0.86
CUX1-206ENST00000437600 MAXP61244 160 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 THOC5Q13769 683 aaKnown RBP9.65□□□□□ -0.86
CUX1-206ENST00000437600 TEX44Q53QW1 395 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 RALGPS1Q5JS13 557 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 C4orf50Q6ZRC1 276 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 RAPH1Q70E73 1250 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 RPS27LQ71UM5 84 aaKnown RBP9.65□□□□□ -0.86
CUX1-206ENST00000437600 PSTKQ8IV42 348 aaKnown RBP9.65□□□□□ -0.86
CUX1-206ENST00000437600 ABI1Q8IZP0 508 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 MICAL1Q8TDZ2 1067 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 CDKL2Q92772 493 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 FAM136AQ96C01 138 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 TMEM106CQ9BVX2 250 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 PHACTR1Q9C0D0 580 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 EBF2Q9HAK2 575 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 SNX15Q9NRS6 342 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 RGS18Q9NS28 235 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.65□□□□□ -0.865e-24■■■■■ 156.6
CUX1-206ENST00000437600 SLC2A6Q9UGQ3 507 aa9.65□□□□□ -0.86
CUX1-206ENST00000437600 NEMP1O14524 444 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 PLIN3O60664 434 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 TADA2AO75478 443 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 GJB3O75712 270 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 HMBSP08397 361 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 FGF3P11487 239 aaPredicted RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 COL6A1P12109 1028 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 PGM1P36871 562 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 FDFT1P37268 417 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 CXCR3P49682 368 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 RASSF2P50749 326 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 SLC5A3P53794 718 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 NIPAL4Q0D2K0 466 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 PCLAFQ15004 111 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 LRRC36Q1X8D7 754 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 FAM171A1Q5VUB5 890 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 BHLHA9Q7RTU4 235 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 ZNF354CQ86Y25 554 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 SPATA2LQ8IUW3 424 aaPredicted RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 LRRC39Q96DD0 335 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 SLC2A13Q96QE2 648 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 ACBD6Q9BR61 282 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 GPR62Q9BZJ7 368 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 DNAI2Q9GZS0 605 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 BFARQ9NZS9 450 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 ZCWPW2A0A1B0GU75 182 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 TRIM43BA6NCK2 446 aa9.64□□□□□ -0.87
CUX1-206ENST00000437600 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.64□□□□□ -0.87
CUX1-206ENST00000437600 E9PBE3 544 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms