RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 RGS18Q9NS28 235 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 CEP72Q9P209 647 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 APEX2Q9UBZ4 518 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 PLAAQ9Y263 795 aa7.43□□□□□ -1.22
SCN9A-202ENST00000409435 USP27XA6NNY8 438 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 HEPACAM2A8MVW5 462 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 SLITRK3O94933 977 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 F2P00734 622 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 ALOX15P16050 662 aaPredicted RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 ARFIP2P53365 341 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 PMS2P54278 862 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 TAS2R50P59544 299 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 YWHAZP63104 245 aaKnown RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 GHRHRQ02643 423 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 DNAL1Q4LDG9 190 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 MARC1Q5VT66 337 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 EPM2AIP1Q7L775 607 aaPredicted RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 GALNT13Q8IUC8 556 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 RHOT1Q8IXI2 618 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 DTX3LQ8TDB6 740 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 TMC2Q8TDI7 906 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 PBKQ96KB5 322 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 KCNS3Q9BQ31 491 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 EBF3Q9H4W6 596 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 CHMP1AQ9HD42 196 aaPredicted RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 SPTLC3Q9NUV7 552 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 KCTD5Q9NXV2 234 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 ADA2Q9NZK5 511 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 DOT1LQ8TEK3 1739 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 SMIM28A0A1B0GU29 152 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 FFAR2O15552 330 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 ANP32DO95626 131 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 FOSL1P15407 271 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 NPR3P17342 541 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 EIF2S3P41091 472 aaKnown RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 EXOSC10Q01780 885 aaKnown RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 SPIDRQ14159 915 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 MYBPC2Q14324 1141 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 CCNG2Q16589 344 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 TTC39BQ5VTQ0 682 aaPredicted RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 C16orf46Q6P387 395 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 PDIK1LQ8N165 341 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 TEPSINQ96N21 525 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 NMRK1Q9NWW6 199 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 TSPAN16Q9UKR8 245 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 OR56A5P0C7T3 313 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 ADARP55265 1226 aaKnown RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 BTKQ06187 659 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 FAM81AQ8TBF8 368 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 POPDC2Q9HBU9 364 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 INSL5Q9Y5Q6 135 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 A8MX80 341 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 CES2O00748 559 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 CTIFO43310 598 aaKnown RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 TSPAN1O60635 241 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 IFNA16P05015 189 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 IMPDH2P12268 514 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 DRD1P21728 446 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 RPL21P46778 160 aaKnown RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 C2orf54Q08AI8 447 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 GRB10Q13322 594 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 TRIP4Q15650 581 aaPredicted RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 BBS9Q3SYG4 887 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 C9orf57Q5W0N0 161 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 PLEKHA7Q6IQ23 1121 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 NT5DC3Q86UY8 548 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 DHX40Q8IX18 779 aaKnown RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 DSELQ8IZU8 1212 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 ZNF248Q8NDW4 579 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 CAPSLQ8WWF8 208 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 RASSF5Q8WWW0 418 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 INPP5DQ92835 1189 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 SERAC1Q96JX3 654 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 C7orf25Q9BPX7 421 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 CISHQ9NSE2 258 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 ZDHHC7Q9NXF8 308 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 TBK1Q9UHD2 729 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 FBXO9Q9UK97 447 aaPredicted RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 CRYBG1Q9Y4K1 1723 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 LRRC53A6NM62 1247 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 KIAA0355O15063 1070 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 PMPCBO75439 489 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 FTLP02792 175 aaPredicted RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 ASGR2P07307 311 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 PSMA3P25788 255 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 POU5F1BQ06416 359 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 WLSQ5T9L3 541 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 ALKBH5Q6P6C2 394 aaKnown RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 FGD2Q7Z6J4 655 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 PANX2Q96RD6 677 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 FERD3LQ96RJ6 166 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 SPRTNQ9H040 489 aaPredicted RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 EPS8L2Q9H6S3 715 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 SPASTQ9UBP0 616 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 USP15Q9Y4E8 981 aaPredicted RBP7.42□□□□□ -1.22
SCN9A-202ENST00000409435 STON1Q9Y6Q2 735 aa7.42□□□□□ -1.22
SCN9A-202ENST00000409435 ARPC4-TTLL3A0A0A6YYG9 625 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 KRT87PA6NCN2 255 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms