RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CRYMQ14894 314 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 PCLAFQ15004 111 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 OASLQ15646 514 aaKnown RBP4.31□□□□□ -1.72
HMGB1-204ENST00000399489 CCDC142Q17RM4 750 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 ALG11Q2TAA5 492 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 GLRA4Q5JXX5 417 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 CBWD5Q5RIA9 395 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 ABLIM2Q6H8Q1 611 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 EFCAB12Q6NXP0 572 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 TTI2Q6NXR4 508 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 WDR93Q6P2C0 686 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 CHST9Q7L1S5 443 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 ARHGEF19Q8IW93 802 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 HMGB4Q8WW32 186 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 CASKIN2Q8WXE0 1202 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 VOPP1Q96AW1 172 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 CMTM3Q96MX0 182 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 ZNF830Q96NB3 372 aaPredicted RBP4.31□□□□□ -1.72
HMGB1-204ENST00000399489 FIZ1Q96SL8 496 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 TUBB6Q9BUF5 446 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 HERC2P3Q9BVR0 1158 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 KRT23Q9C075 422 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 REXO4Q9GZR2 422 aaKnown RBP4.31□□□□□ -1.72
HMGB1-204ENST00000399489 SLC25A32Q9H2D1 315 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 TAOK3Q9H2K8 898 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 TASP1Q9H6P5 420 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 MRPL44Q9H9J2 332 aaKnown RBP4.31□□□□□ -1.72
HMGB1-204ENST00000399489 AKIP1Q9NQ31 210 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 XPNPEP3Q9NQH7 507 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.31□□□□□ -1.72
HMGB1-204ENST00000399489 PAPOLBQ9NRJ5 636 aaKnown RBP4.31□□□□□ -1.72
HMGB1-204ENST00000399489 TMEM140Q9NV12 185 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 EHD2Q9NZN4 543 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 KCND2Q9NZV8 630 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 PCSK5Q92824 1860 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 PNMA6EA0A0J9YXQ4 647 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 CENPVL1A0A0U1RR11 272 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 FRMD3A2A2Y4 597 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 GAGE10A6NGK3 116 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 TMEM200CA6NKL6 621 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 B5MCH6 92 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 AKR1B15C9JRZ8 316 aaPredicted RBP4.3□□□□□ -1.72
HMGB1-204ENST00000399489 WNT10BO00744 389 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 SEPT4O43236 478 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 SMPD2O60906 423 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 SEC14L2O76054 403 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 TUBBP07437 444 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 GJB1P08034 283 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 TNNT1P13805 278 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 SELLP14151 372 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 CDH2P19022 906 aaPredicted RBP4.3□□□□□ -1.72
HMGB1-204ENST00000399489 MCM3P25205 808 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 ARL1P40616 181 aaPredicted RBP4.3□□□□□ -1.72
HMGB1-204ENST00000399489 NRIP1P48552 1158 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 GUCY1B3Q02153 619 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 MEP1BQ16820 701 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 KLHL35Q6PF15 583 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 SYCE2Q6PIF2 218 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 SYNE3Q6ZMZ3 975 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 MEX3BQ6ZN04 569 aaKnown RBP4.3□□□□□ -1.72
HMGB1-204ENST00000399489 OTUD6AQ7L8S5 288 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 TMEM110Q86TL2 294 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 ANKRD44Q8N8A2 993 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 GIMAP1Q8WWP7 306 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 MRPS27Q92552 414 aaKnown RBP4.3□□□□□ -1.72
HMGB1-204ENST00000399489 WDR24Q96S15 920 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 SYT17Q9BSW7 474 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 WDR11Q9BZH6 1224 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 C11orf54Q9H0W9 315 aaPredicted RBP4.3□□□□□ -1.72
HMGB1-204ENST00000399489 FAM83DQ9H4H8 585 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 SERHL2Q9H4I8 314 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 ZNF768Q9H5H4 540 aaKnown RBP4.3□□□□□ -1.72
HMGB1-204ENST00000399489 KAT14Q9H8E8 782 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 TMLHEQ9NVH6 421 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 RLIMQ9NVW2 624 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 ZSCAN32Q9NX65 697 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 CFAP97Q9P2B7 532 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 CGNQ9P2M7 1197 aaKnown RBP4.3□□□□□ -1.72
HMGB1-204ENST00000399489 ANKFY1Q9P2R3 1169 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 HPSEQ9Y251 543 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 RUVBL1Q9Y265 456 aaKnown RBP4.3□□□□□ -1.72
HMGB1-204ENST00000399489 ATP11BQ9Y2G3 1177 aa4.3□□□□□ -1.72
HMGB1-204ENST00000399489 SPAG9O60271 1321 aaKnown RBP4.3□□□□□ -1.72
HMGB1-204ENST00000399489 FAM90A7PA6NKC0 464 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 AQP7P3A6NL99 342 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 A8MVJ9 347 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 FAM90A22PA8MWA6 464 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 FAM90A12PA8MX19 464 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 FAM90A23PA8MXZ1 464 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 A8MZ25 164 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 AHRRA9YTQ3 701 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 KIF5CO60282 957 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 NDUFA10O95299 355 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 EIF2S1P05198 315 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 HKR1P10072 659 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 PIM1P11309 404 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 FDPSP14324 419 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 LMO1P25800 156 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 TNFRSF8P28908 595 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 PIP4K2AP48426 406 aaPredicted RBP4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms