RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 DUSP10Q9Y6W6 482 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 FCHO1O14526 889 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 MFN2O95140 757 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 HYIQ5T013 277 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 SLC16A10Q8TF71 515 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 NRDE2Q9H7Z3 1164 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 DDX20Q9UHI6 824 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 PCDHA11Q9Y5I1 949 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 UNC13BO14795 1591 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 IFNA16P05015 189 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 ACADLP28330 430 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 RERGQ96A58 199 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 KPNA3O00505 521 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 NOL9Q5SY16 702 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 PIK3R5Q8WYR1 880 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 PDCD10Q9BUL8 212 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 PTPRHQ9HD43 1115 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 PQBP1O60828 265 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 VIL1P09327 827 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 POLD2P49005 469 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 ZNF549Q6P9A3 640 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 MYDGFQ969H8 173 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 SPATC1LQ9H0A9 340 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 LRCH1Q9Y2L9 728 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 SNUPNO95149 360 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 ANXA5P08758 320 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 AMD1P17707 334 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 AMPD1P23109 780 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 PEX6Q13608 980 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 SLC39A12Q504Y0 691 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 ZSCAN18Q8TBC5 510 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 CEP41Q9BYV8 373 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 TRAV19A0A0A6YYK7 116 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 MAGEC1O60732 1142 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 CATP04040 527 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 ARHGDIBP52566 201 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 SNRPD1P62314 119 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 CDK16Q00536 496 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 LY6KQ17RY6 165 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 SPDYCQ5MJ68 293 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 SV2AQ7L0J3 742 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 C16orf59Q7L2K0 433 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 MYLPFQ96A32 169 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 TKTL2Q9H0I9 626 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 EHD3Q9NZN3 535 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 TRPV2Q9Y5S1 764 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 OR10H2O60403 315 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 GPAT3Q53EU6 434 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 DSELQ8IZU8 1212 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 UROC1Q96N76 676 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 RSPH9Q9H1X1 276 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 CYLDQ9NQC7 956 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 PRDM8Q9NQV8 689 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 VPS4AQ9UN37 437 aa12.96□□□□□ -0.33
CCDC88C-204ENST00000389857 MLYCDO95822 493 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 INSRRP14616 1297 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 ACER1Q8TDN7 264 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 FAM192AQ9GZU8 254 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 RHBGQ9H310 441 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 TIMM13Q9Y5L4 95 aaPredicted RBP12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 MADDQ8WXG6 1647 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 CPS1P31327 1500 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 ASTN2O75129 1339 aaPredicted RBP12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 OPLAHO14841 1288 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 RPL14P50914 215 aaKnown RBP12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 MARSP56192 900 aaKnown RBP12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 PARP6Q2NL67 630 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 DNAJC14Q6Y2X3 702 aaPredicted RBP12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 STAG3L4Q8TBR4 150 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 ZNF606Q8WXB4 792 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 NELL1Q92832 810 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 FUT8Q9BYC5 575 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 KCNK4Q9NYG8 393 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 CHKBQ9Y259 395 aa12.96□□□□□ -0.34
CCDC88C-204ENST00000389857 CCDC182A6NF36 153 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 SLC28A1O00337 649 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 QSOX1O00391 747 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 AKAP3O75969 853 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 RPL9P32969 192 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 RGS1Q08116 209 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 PPIDQ08752 370 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 TROAPQ12815 778 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 SQLEQ14534 574 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 NKAPQ8N5F7 415 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 PGLYRP2Q96PD5 576 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 CDRT15Q96T59 188 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 CPA4Q9UI42 421 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 DLC1Q96QB1 1528 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 CYP2R1Q6VVX0 501 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 SNX32Q86XE0 403 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 ZSWIM2Q8NEG5 633 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 SELENOMQ8WWX9 145 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 ELMO1Q92556 727 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 MCRS1Q96EZ8 462 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 BTBD9Q96Q07 612 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 CLCC1Q96S66 551 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 USP17L7P0C7H9 530 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 NFKB1P19838 968 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 RPA3P35244 121 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 TNK2Q07912 1038 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms