RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CCDC153Q494R4 210 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PAN2Q504Q3 1202 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 C1orf189Q5VU69 101 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ULK3Q6PHR2 472 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 HHIPL2Q6UWX4 724 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ENOSF1Q7L5Y1 443 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 KANSL1Q7Z3B3 1105 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ABHD12BQ7Z5M8 362 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TPH2Q8IWU9 490 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM192Q8IY95 271 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 IL22RA1Q8N6P7 574 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 C10orf53Q8N6V4 93 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ABHD11Q8NFV4 315 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 GRAMD1AQ96CP6 724 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NT5C1BQ96P26 610 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 HIPK3Q9H422 1215 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 GMPPBQ9Y5P6 360 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PKD1L2Q7Z442 2459 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 KDM5BQ9UGL1 1544 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ANKRD36A6QL64 1941 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NOL4O94818 638 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NPR3P17342 541 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MUTP22033 750 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RCVRNP35243 200 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SLC1A2P43004 574 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 GSTM5P46439 218 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 KDSRQ06136 332 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CLCA4Q14CN2 919 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TATDN3Q17R31 274 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF827Q17R98 1081 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NDUFAF6Q330K2 333 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RABL6Q3YEC7 729 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 EPHX4Q8IUS5 362 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CCDC33Q8N5R6 958 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 GOT1L1Q8NHS2 421 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CERKQ8TCT0 537 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 DGCR14Q96DF8 476 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NELL2Q99435 816 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NOD2Q9HC29 1040 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 BAZ2AQ9UIF9 1905 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 DNMT1P26358 1616 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CACNB4O00305 520 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NUAK1O60285 661 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ASS1P00966 412 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ANXA6P08133 673 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 H2AFZP0C0S5 128 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 DRD4P21917 467 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ARRB1P49407 418 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NDST2P52849 883 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RCAN1P53805 252 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 BST2Q10589 180 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 GUK1Q16774 197 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 DARS2Q6PI48 645 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SLC36A4Q6YBV0 504 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 H2AFVQ71UI9 128 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TRIM74Q86UV6 250 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TRIM73Q86UV7 250 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 LSMEM2Q8N112 164 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CPEB3Q8NE35 698 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 GPRC5AQ8NFJ5 357 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 KRT35Q92764 455 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 FKBP10Q96AY3 582 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RIOK2Q9BVS4 552 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 EGLN3Q9H6Z9 239 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 JMJD4Q9H9V9 463 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 KCNQ5Q9NR82 932 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 AASDHPPTQ9NRN7 309 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 GCNT4Q9P109 453 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PPIEQ9UNP9 301 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ERGIC3Q9Y282 383 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 AXIN2Q9Y2T1 843 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PIK3C2GO75747 1445 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 DHX15O43143 795 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ERAL1O75616 437 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CELF2O95319 508 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 APOC1P02654 83 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NFICP08651 508 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ALADP13716 330 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 FAHP16930 419 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CHRNA3P32297 505 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 GTF2H1P32780 548 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PPP2R2BQ00005 443 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RHAGQ02094 409 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SMCO1Q147U7 214 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ZDHHC20Q5W0Z9 365 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ERICH5Q6P6B1 374 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF554Q86TJ5 538 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CCNYL1Q8N7R7 359 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PI4KAP1Q8N8J0 262 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 CNOT9Q92600 299 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 VCPIP1Q96JH7 1222 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TRABDQ9H4I3 376 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TLR8Q9NR97 1041 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 FAM105AQ9NUU6 356 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SETD4Q9NVD3 440 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 GPRC5BQ9NZH0 403 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PYCARDQ9ULZ3 195 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SPIN1Q9Y657 262 aaPredicted RBP2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms