RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 VAV1P15498 845 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 DRD3P35462 400 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 GABRB2P47870 512 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 COPB1P53618 953 aaKnown RBP19.49■□□□□ 0.71
CDX1-202ENST00000616154 JAM2P57087 298 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 MTA1Q13330 715 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 CAMK2BQ13554 666 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 SHBQ15464 509 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 PRAMEF14Q5SWL7 426 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 MARCH9Q86YJ5 346 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 TMEM35BQ8NCS4 154 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 EPS8L1Q8TE68 723 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 SAP25Q8TEE9 199 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 ALG14Q96F25 216 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 SERAC1Q96JX3 654 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 PPP1R9BQ96SB3 815 aa19.49■□□□□ 0.71
CDX1-202ENST00000616154 FASNP49327 2511 aaKnown RBP19.48■□□□□ 0.71
CDX1-202ENST00000616154 ARID1BQ8NFD5 2236 aaPredicted RBP19.48■□□□□ 0.71
CDX1-202ENST00000616154 SYNJ2BP-COX16A0A087WUM0 186 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 SLC7A4O43246 635 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 TPM2P07951 284 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 PPP2CBP62714 309 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 PPP2CAP67775 309 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 CENPCQ03188 943 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 CCDC157Q569K6 752 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 SLC45A4Q5BKX6 768 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 FKBP15Q5T1M5 1219 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 C19orf48Q6RUI8 117 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 FAM183BPQ6ZVS7 135 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 DSG4Q86SJ6 1040 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 ZNF677Q86XU0 584 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 GATAD2AQ86YP4 633 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 RNF34Q969K3 372 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 RPRD1AQ96P16 312 aaPredicted RBP19.48■□□□□ 0.71
CDX1-202ENST00000616154 KDM4CQ9H3R0 1056 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 COX16Q9P0S2 106 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 RAXQ9Y2V3 346 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 PCDHGA1Q9Y5H4 931 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 IGSF10Q6WRI0 2623 aa19.48■□□□□ 0.71
CDX1-202ENST00000616154 TBC1D3DA0A087WVF3 549 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 TBC1D3IA0A087WXS9 549 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 TBC1D3EA0A087X179 549 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 TBC1D3KA0A087X1G2 549 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 TBC1D3FA6NER0 549 aaPredicted RBP19.47■□□□□ 0.71
CDX1-202ENST00000616154 TRABD2BA6NFA1 517 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 TBC1D3LB9A6J9 549 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 EPHB6O15197 1021 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 ATP9BO43861 1147 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 DAB1O75553 588 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 GRAP2O75791 330 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 ITGAVP06756 1048 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 TBC1D3HP0C7X1 549 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 EPHA8P29322 1005 aaPredicted RBP19.47■□□□□ 0.71
CDX1-202ENST00000616154 NUMBP49757 651 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 NXPH1P58417 271 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 SLC6A3Q01959 620 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 AUHQ13825 339 aaKnown RBP19.47■□□□□ 0.71
CDX1-202ENST00000616154 COL9A2Q14055 689 aaPredicted RBP19.47■□□□□ 0.71
CDX1-202ENST00000616154 TBC1D3GQ6DHY5 549 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 TBC1D3CQ6IPX1 549 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 NAPEPLDQ6IQ20 393 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 DHRS13Q6UX07 377 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.47■□□□□ 0.71
CDX1-202ENST00000616154 NOP9Q86U38 636 aaKnown RBP19.47■□□□□ 0.71
CDX1-202ENST00000616154 TBC1D3Q8IZP1 549 aaPredicted RBP19.47■□□□□ 0.71
CDX1-202ENST00000616154 OR8D1Q8WZ84 308 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 ERGIC2Q96RQ1 377 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 FEM1AQ9BSK4 669 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 SLC25A13Q9UJS0 675 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 NOCTQ9UK39 431 aaKnown RBP19.47■□□□□ 0.71
CDX1-202ENST00000616154 OR51B4Q9Y5P0 310 aa19.47■□□□□ 0.71
CDX1-202ENST00000616154 FAM149AA5PLN7 773 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 E9PAM4 449 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 TLR4O00206 839 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 ENC1O14682 589 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 ALOX15BO15296 676 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 PLRG1O43660 514 aaKnown RBP19.46■□□□□ 0.71
CDX1-202ENST00000616154 NUDT1P36639 197 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 ARRB1P49407 418 aaPredicted RBP19.46■□□□□ 0.71
CDX1-202ENST00000616154 KLK7P49862 253 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 IRAK1P51617 712 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 METAP1P53582 386 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 COL28A1Q2UY09 1125 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 C5orf22Q49AR2 442 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 FAM46CQ5VWP2 391 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 TMPRSS12Q86WS5 348 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 OXR1Q8N573 874 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 PDCD7Q8N8D1 485 aaKnown RBP19.46■□□□□ 0.71
CDX1-202ENST00000616154 MFSD2AQ8NA29 543 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 ANKRD20A12PQ8NF67 263 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 OR52K2Q8NGK3 314 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 NT5C3BQ969T7 300 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 CNDP2Q96KP4 475 aaKnown RBP19.46■□□□□ 0.71
CDX1-202ENST00000616154 ERVMER34-1Q9H9K5 563 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 SCUBE2Q9NQ36 999 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 RRN3Q9NYV6 651 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 ARHGAP20Q9P2F6 1191 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 SARDHQ9UL12 918 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 VANGL2Q9ULK5 521 aa19.46■□□□□ 0.71
CDX1-202ENST00000616154 HS3ST4Q9Y661 456 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms