RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 RBSNQ9H1K0 784 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 RSPH9Q9H1X1 276 aaPredicted RBP16.6■□□□□ 0.25
LSM4-206ENST00000600289 ITM2CQ9NQX7 267 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 RXFP3Q9NSD7 469 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 TMEM248Q9NWD8 314 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 ZNHIT6Q9NWK9 470 aaKnown RBP16.6■□□□□ 0.25
LSM4-206ENST00000600289 VPS28Q9UK41 221 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 WASF3Q9UPY6 502 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 IGSF10Q6WRI0 2623 aa16.6■□□□□ 0.25
LSM4-206ENST00000600289 EDDM13A0A1B0GTR0 161 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 FAM72CH0Y354 149 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 ATP9BO43861 1147 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 FOXD2O60548 495 aaPredicted RBP16.59■□□□□ 0.25
LSM4-206ENST00000600289 KCNK5O95279 499 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 CYP1A2P05177 515 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 OR1E1P30953 314 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 EIF4A3P38919 411 aaKnown RBP16.59■□□□□ 0.25
LSM4-206ENST00000600289 NNMTP40261 264 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 KRT83P78385 493 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 FAM72AQ5TYM5 149 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 FAM72DQ6L9T8 149 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 FAM72BQ86X60 149 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 PSTKQ8IV42 348 aaKnown RBP16.59■□□□□ 0.25
LSM4-206ENST00000600289 RLN3Q8WXF3 142 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 SIPA1Q96FS4 1042 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 MRFAP1L1Q96HT8 127 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 PSMB7Q99436 277 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 TRIM5Q9C035 493 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 THAP2Q9H0W7 228 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 MUC3BQ9H195 1237 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 SLC6A17Q9H1V8 727 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 SLC25A13Q9UJS0 675 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 HS3ST2Q9Y278 367 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 FREM2Q5SZK8 3169 aa16.59■□□□□ 0.25
LSM4-206ENST00000600289 HELZ2Q9BYK8 2649 aaKnown RBP16.58■□□□□ 0.25
LSM4-206ENST00000600289 LRCH4O75427 683 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 RNF8O76064 485 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 OXTRP30559 389 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 PCK1P35558 622 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 ETFBP38117 255 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 DPP6P42658 865 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 STK19P49842 368 aaPredicted RBP16.58■□□□□ 0.24
LSM4-206ENST00000600289 RPS14P62263 151 aaKnown RBP16.58■□□□□ 0.24
LSM4-206ENST00000600289 TSR1Q2NL82 804 aaKnown RBP16.58■□□□□ 0.24
LSM4-206ENST00000600289 PLA2G2CQ5R387 149 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 CCDC122Q5T0U0 273 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 C9orf64Q5T6V5 341 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 SCYL2Q6P3W7 929 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 KIAA1324Q6UXG2 1013 aaKnown RBP16.58■□□□□ 0.24
LSM4-206ENST00000600289 LPCAT2Q7L5N7 544 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 TFAP2DQ7Z6R9 452 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 SH2D3CQ8N5H7 860 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 ARFGAP1Q8N6T3 406 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 ZNF366Q8N895 744 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 NIPA2Q8N8Q9 360 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 FRS2Q8WU20 508 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 EPAS1Q99814 870 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 TRIM7Q9C029 511 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 MYO1AQ9UBC5 1043 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 SLCO3A1Q9UIG8 710 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 SCML1Q9UN30 329 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 INVSQ9Y283 1065 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 SDK1Q7Z5N4 2213 aa16.58■□□□□ 0.24
LSM4-206ENST00000600289 BCLAF3A2AJT9 711 aaKnown RBP16.57■□□□□ 0.24
LSM4-206ENST00000600289 TMEM8BA6NDV4 472 aa16.57■□□□□ 0.24
LSM4-206ENST00000600289 WASH4PA8MWX3 477 aa16.57■□□□□ 0.24
LSM4-206ENST00000600289 TTC34A8MYJ7 566 aa16.57■□□□□ 0.24
LSM4-206ENST00000600289 AKR1B15C9JRZ8 316 aaPredicted RBP16.57■□□□□ 0.24
LSM4-206ENST00000600289 SIN3BO75182 1162 aa16.57■□□□□ 0.24
LSM4-206ENST00000600289 TPMTP51580 245 aa16.57■□□□□ 0.24
LSM4-206ENST00000600289 CLCN6P51797 869 aa16.57■□□□□ 0.24
LSM4-206ENST00000600289 ZNF135P52742 658 aaPredicted RBP16.57■□□□□ 0.24
LSM4-206ENST00000600289 GNA12Q03113 381 aa16.57■□□□□ 0.24
LSM4-206ENST00000600289 GFPT1Q06210 699 aaPredicted RBP16.57■□□□□ 0.24
LSM4-206ENST00000600289 SF3A2Q15428 464 aaKnown RBP16.57■□□□□ 0.24
LSM4-206ENST00000600289 PEAR1Q5VY43 1037 aaPredicted RBP16.57■□□□□ 0.24
LSM4-206ENST00000600289 ZNF776Q68DI1 518 aaPredicted RBP16.57■□□□□ 0.24
LSM4-206ENST00000600289 CYP4V2Q6ZWL3 525 aaPredicted RBP16.57■□□□□ 0.24
LSM4-206ENST00000600289 FRMD1Q8N878 549 aa16.57■□□□□ 0.24
LSM4-206ENST00000600289 PTPRN2Q92932 1015 aa16.57■□□□□ 0.24
LSM4-206ENST00000600289 RPL10LQ96L21 214 aaKnown RBP16.57■□□□□ 0.24
LSM4-206ENST00000600289 ACE2Q9BYF1 805 aaPredicted RBP16.57■□□□□ 0.24
LSM4-206ENST00000600289 MAGEB5Q9BZ81 275 aa16.57■□□□□ 0.24
LSM4-206ENST00000600289 VPS51Q9UID3 782 aa16.57■□□□□ 0.24
LSM4-206ENST00000600289 CYP8B1Q9UNU6 501 aa16.57■□□□□ 0.24
LSM4-206ENST00000600289 A0A0D9SEW6 157 aa16.56■□□□□ 0.24
LSM4-206ENST00000600289 ALOX15BO15296 676 aa16.56■□□□□ 0.24
LSM4-206ENST00000600289 FGF10O15520 208 aaPredicted RBP16.56■□□□□ 0.24
LSM4-206ENST00000600289 MAP3K13O43283 966 aa16.56■□□□□ 0.24
LSM4-206ENST00000600289 ZMPSTE24O75844 475 aa16.56■□□□□ 0.24
LSM4-206ENST00000600289 ACADMP11310 421 aa16.56■□□□□ 0.24
LSM4-206ENST00000600289 CD6P30203 668 aa16.56■□□□□ 0.24
LSM4-206ENST00000600289 MIPP30301 263 aa16.56■□□□□ 0.24
LSM4-206ENST00000600289 HOXD12P35452 270 aa16.56■□□□□ 0.24
LSM4-206ENST00000600289 MPLP40238 635 aa16.56■□□□□ 0.24
LSM4-206ENST00000600289 ZNF75DP51815 510 aa16.56■□□□□ 0.24
LSM4-206ENST00000600289 GALCP54803 685 aa16.56■□□□□ 0.24
LSM4-206ENST00000600289 ADKP55263 362 aaKnown RBP16.56■□□□□ 0.24
LSM4-206ENST00000600289 PIGHQ14442 188 aaPredicted RBP16.56■□□□□ 0.24
LSM4-206ENST00000600289 ELAVL3Q14576 367 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms