RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 E2F8A0AVK6 867 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 ILVBLA1L0T0 632 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 GOLGA8MH3BSY2 632 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 KCNK1O00180 336 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 MATN3O15232 486 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 TBL1XO60907 577 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 RFPL2O75678 378 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 ACSL3O95573 720 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 GSTA2P09210 222 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 FAM153BP0C7A2 387 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 ZSCAN5DPP0CG00 497 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 MLNP12872 115 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 ETS1P14921 441 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 VAV1P15498 845 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 TSHRP16473 764 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 DNAJB1P25685 340 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 PTPN3P26045 913 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 PSMB4P28070 264 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 ECHS1P30084 290 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 GBP2P32456 591 aaPredicted RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 STX2P32856 288 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 BMP8BP34820 402 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 IRS1P35568 1242 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 HSD17B3P37058 310 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 MMP13P45452 471 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 IFNAR2P48551 515 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 EPHA5P54756 1037 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 IFI35P80217 286 aaPredicted RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 GNA12Q03113 381 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 SEMA5AQ13591 1074 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 SLC12A1Q13621 1099 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 HNRNPDQ14103 355 aaKnown RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 KCNJ11Q14654 390 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 RFTN1Q14699 578 aaPredicted RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 TEAD2Q15562 447 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 DUSP6Q16828 381 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 KLHL38Q2WGJ6 581 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 KRT71Q3SY84 523 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 BBS9Q3SYG4 887 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 FAM153CQ494X1 144 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 CCDC38Q502W7 563 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 TEX44Q53QW1 395 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 CEP85LQ5SZL2 805 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 COL13A1Q5TAT6 717 aaPredicted RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 ZNF697Q5TEC3 545 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 CASC4Q6P4E1 433 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 RFWD3Q6PCD5 774 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 ZDHHC24Q6UX98 284 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 GRASPQ7Z6J2 395 aaPredicted RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 CCNJLQ8IV13 435 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 CMTM8Q8IZV2 173 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 ZNF567Q8N184 647 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 CPXM2Q8N436 756 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 RIBC1Q8N443 379 aaPredicted RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 CCDC33Q8N5R6 958 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 ARFGAP2Q8N6H7 521 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 NPWQ8N729 165 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 TDRD5Q8NAT2 981 aaKnown RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 MCUQ8NE86 351 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 SLC22A17Q8WUG5 538 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 CPT1BQ92523 772 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 CDKL2Q92772 493 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 FATE1Q969F0 183 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 TMA16Q96EY4 203 aaKnown RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 ZNF599Q96NL3 588 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 AGAP3Q96P47 875 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 TSGA13Q96PP4 275 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 GDF15Q99988 308 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 C2orf49Q9BVC5 232 aaPredicted RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 SLC39A8Q9C0K1 460 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 POLR1EQ9GZS1 481 aaKnown RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 NEUROG2Q9H2A3 272 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 IL21Q9HBE4 155 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 ANLNQ9NQW6 1124 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 TDP1Q9NUW8 608 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 THG1LQ9NWX6 298 aaKnown RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 BFARQ9NZS9 450 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 OGFRQ9NZT2 677 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 IGSF9Q9P2J2 1179 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 TXNDC16Q9P2K2 825 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 UBA2Q9UBT2 640 aaPredicted RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 FAM153AQ9UHL3 310 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 IPO11Q9UI26 975 aaKnown RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 SLC25A13Q9UJS0 675 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 VPS28Q9UK41 221 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 AGO1Q9UL18 857 aaKnown RBP6.32□□□□□ -1.4
LIG3-206ENST00000586058 SLC8A2Q9UPR5 921 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 MFHAS1Q9Y4C4 1052 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 MYOFQ9NZM1 2061 aa6.32□□□□□ -1.4
LIG3-206ENST00000586058 SCN8AQ9UQD0 1980 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 TMEM265A0A087WTH1 108 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 DRGXA6NNA5 263 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 HMGB1P1B2RPK0 211 aaPredicted RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 I6L893 689 aaPredicted RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 CBX4O00257 560 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 LEFTY2O00292 366 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 MAP2K7O14733 419 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 PER2O15055 1255 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 RGS16O15492 202 aaPredicted RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 RIPK2O43353 540 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms