RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ALFQ53S48 1182 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 ARTNQ5T4W7 220 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 NUGGCQ68CJ6 796 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 FBXL22Q6P050 247 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 BEND5Q7L4P6 421 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 GPR155Q7Z3F1 870 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 UNC45BQ8IWX7 931 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 PYROXD2Q8N2H3 581 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 CPXM2Q8N436 756 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 NETO2Q8NC67 525 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 MSANTD4Q8NCY6 345 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 BAHD1Q8TBE0 780 aaPredicted RBP14.31□□□□□ -0.12
CLN3-235ENST00000568497 FAM172AQ8WUF8 416 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 XPO6Q96QU8 1125 aaKnown RBP14.31□□□□□ -0.12
CLN3-235ENST00000568497 PRMT1Q99873 361 aaKnown RBP14.31□□□□□ -0.12
CLN3-235ENST00000568497 EDEM3Q9BZQ6 932 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 CIPCQ9C0C6 399 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 CD93Q9NPY3 652 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 SPTLC3Q9NUV7 552 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 MPP6Q9NZW5 540 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 CNOT8Q9UFF9 292 aaKnown RBP14.31□□□□□ -0.12
CLN3-235ENST00000568497 FNDC3AQ9Y2H6 1198 aaKnown RBP14.31□□□□□ -0.12
CLN3-235ENST00000568497 ZNF510Q9Y2H8 683 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 CFAP46Q8IYW2 2715 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 SPTA1P02549 2419 aa14.31□□□□□ -0.12
CLN3-235ENST00000568497 A0A1B0GTW7 788 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 FAM72CH0Y354 149 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 MFAP3LO75121 409 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 CYBBP04839 570 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 CALB1P05937 261 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 TCF4P15884 667 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 NDUFV2P19404 249 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 GPD1P21695 349 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 CCR1P32246 355 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 CHKAP35790 457 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 CXCR3P49682 368 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 C1QBPQ07021 282 aaKnown RBP14.3□□□□□ -0.12
CLN3-235ENST00000568497 TBX2Q13207 712 aaPredicted RBP14.3□□□□□ -0.12
CLN3-235ENST00000568497 MAMLD1Q13495 774 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 SLC25A52Q3SY17 297 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 FUT11Q495W5 492 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 MPPE1Q53F39 396 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 PPP1R15BQ5SWA1 713 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 FAM72AQ5TYM5 149 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 FAM72DQ6L9T8 149 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 SCYL2Q6P3W7 929 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 SARM1Q6SZW1 724 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 DHRS13Q6UX07 377 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 CHST9Q7L1S5 443 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 FAM72BQ86X60 149 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 ZDHHC17Q8IUH5 632 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 APCDD1Q8J025 514 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 ARFGAP1Q8N6T3 406 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 ATP6V0D2Q8N8Y2 350 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 NT5C3BQ969T7 300 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 THAP2Q9H0W7 228 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 WDCPQ9H6R7 721 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 STOML2Q9UJZ1 356 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 INTS6Q9UL03 887 aaKnown RBP14.3□□□□□ -0.12
CLN3-235ENST00000568497 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.3□□□□□ -0.12
CLN3-235ENST00000568497 AK5Q9Y6K8 562 aa14.3□□□□□ -0.12
CLN3-235ENST00000568497 SIGLEC16A6NMB1 481 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 SRGAP2O75044 1071 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 CCDC172P0C7W6 258 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 MZF1P28698 734 aaPredicted RBP14.29□□□□□ -0.12
CLN3-235ENST00000568497 SDC4P31431 198 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 SNX16P57768 344 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 CCDC122Q5T0U0 273 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 DCUN1D2Q6PH85 259 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 IL27RAQ6UWB1 636 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 DBX2Q6ZNG2 339 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 BNIPLQ7Z465 357 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 TFAP2DQ7Z6R9 452 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 MFN1Q8IWA4 741 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 FAM181AQ8N9Y4 354 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 SPC24Q8NBT2 197 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 C3orf20Q8ND61 904 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 LMLNQ96KR4 655 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 BTN2A3PQ96KV6 586 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 RPRD1AQ96P16 312 aaPredicted RBP14.29□□□□□ -0.12
CLN3-235ENST00000568497 PEBP4Q96S96 227 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 ABHD10Q9NUJ1 306 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.29□□□□□ -0.12
CLN3-235ENST00000568497 ARHGEF38Q9NXL2 777 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 FBXO10Q9UK96 956 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 STAP1Q9ULZ2 295 aa14.29□□□□□ -0.12
CLN3-235ENST00000568497 F5H5T6 163 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 TLX3O43711 291 aaPredicted RBP14.28□□□□□ -0.12
CLN3-235ENST00000568497 RTN2O75298 545 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 TPM3P06753 285 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 PRKCHP24723 683 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 PSMA2P25787 234 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 NTSR1P30989 418 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 CSKP41240 450 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 IL12RB1P42701 662 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 CXADRP78310 365 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 NNTQ13423 1086 aa14.28□□□□□ -0.12
CLN3-235ENST00000568497 SUZ12Q15022 739 aaKnown RBP14.28□□□□□ -0.12
CLN3-235ENST00000568497 SMAD1Q15797 465 aaKnown RBP14.28□□□□□ -0.12
CLN3-235ENST00000568497 CA9Q16790 459 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms