RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 SLC5A2P31639 672 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 SULT2A1Q06520 285 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 NR0B2Q15466 257 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 KIF26BQ2KJY2 2108 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 ZNF284Q2VY69 593 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 DEFB133Q30KQ1 61 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 PERM1Q5SV97 790 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 RAP1GAP2Q684P5 730 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 GCNT7Q6ZNI0 430 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 INTS8Q75QN2 995 aaKnown RBP16.65■□□□□ 0.26
CLK3-223ENST00000568488 HORMAD1Q86X24 394 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 GRAMD1CQ8IYS0 662 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 LINC00301Q8NCQ3 95 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 KIAA0895Q8NCT3 520 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 TMEM174Q8WUU8 243 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 KCTD13Q8WZ19 329 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 SEMA4DQ92854 862 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 FCRL2Q96LA5 508 aaPredicted RBP16.65■□□□□ 0.26
CLK3-223ENST00000568488 SEMA3CQ99985 751 aa16.65■□□□□ 0.26
CLK3-223ENST00000568488 IPO11Q9UI26 975 aaKnown RBP16.65■□□□□ 0.26
CLK3-223ENST00000568488 H3BM21 787 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 NOBOXO60393 691 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 PCDH8O95206 1070 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 LTFP02788 710 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 CR2P20023 1033 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 SYT1P21579 422 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 NASPP49321 788 aaPredicted RBP16.64■□□□□ 0.25
CLK3-223ENST00000568488 SLC12A1Q13621 1099 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 TBR1Q16650 682 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 PIP5KL1Q5T9C9 394 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 NEK5Q6P3R8 708 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 SHC4Q6S5L8 630 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 Q6ZVU0 165 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 CHSY1Q86X52 802 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 PTRH1Q86Y79 214 aaKnown RBP16.64■□□□□ 0.25
CLK3-223ENST00000568488 FBXO39Q8N4B4 442 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 LMX1AQ8TE12 382 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 IL12RB2Q99665 862 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 TMEM8AQ9HCN3 771 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 EXOC1Q9NV70 894 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 XPO7Q9UIA9 1087 aaKnown RBP16.64■□□□□ 0.25
CLK3-223ENST00000568488 SALL4Q9UJQ4 1053 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 SLC25A13Q9UJS0 675 aa16.64■□□□□ 0.25
CLK3-223ENST00000568488 NYNRINQ9P2P1 1898 aaKnown RBP16.64■□□□□ 0.25
CLK3-223ENST00000568488 NBPF19A0A087WUL8 3843 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 A6NNZ2 444 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 KPNA3O00505 521 aaPredicted RBP16.63■□□□□ 0.25
CLK3-223ENST00000568488 PLD2O14939 933 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 MCF2LO15068 1137 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 CUTAO60888 179 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 CSF2P04141 144 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 SETSIPP0DME0 302 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 SPIDRQ14159 915 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 DLG2Q15700 870 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 MANEAQ5SRI9 462 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 KRT39Q6A163 491 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 ABI3BPQ7Z7G0 1075 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 CIR1Q86X95 450 aaPredicted RBP16.63■□□□□ 0.25
CLK3-223ENST00000568488 DCP2Q8IU60 420 aaKnown RBP16.63■□□□□ 0.25
CLK3-223ENST00000568488 FAM186BQ8IYM0 893 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 ZSCAN1Q8NBB4 408 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 CLEC4CQ8WTT0 213 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 IRGQQ8WZA9 623 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 SERPINB11Q96P15 392 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 SLC25A18Q9H1K4 315 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 EPB41L5Q9HCM4 733 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 TLR6Q9Y2C9 796 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 PAXBP1Q9Y5B6 917 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 CSNK1G3Q9Y6M4 447 aa16.63■□□□□ 0.25
CLK3-223ENST00000568488 MAPK13O15264 365 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 AQP9O43315 295 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 KLRC4O43908 158 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 PPP6R2O75170 966 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 TACR2P21452 398 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 NR2F2P24468 414 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 RPIAP49247 311 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 CYP4F2P78329 520 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 CCDC15Q0P6D6 951 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 MAPK8IP2Q13387 824 aaPredicted RBP16.62■□□□□ 0.25
CLK3-223ENST00000568488 FZD2Q14332 565 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 SEL1L3Q68CR1 1132 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 RAB11FIP2Q7L804 512 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 SCML4Q8N228 414 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 DQX1Q8TE96 717 aaKnown RBP16.62■□□□□ 0.25
CLK3-223ENST00000568488 ERCC4Q92889 916 aaPredicted RBP16.62■□□□□ 0.25
CLK3-223ENST00000568488 GLMNQ92990 594 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 RNF34Q969K3 372 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 FAXDC2Q96IV6 333 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 BMFQ96LC9 184 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 CCDC3Q9BQI4 270 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 MIS12Q9H081 205 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 DYRK4Q9NR20 520 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 RAB20Q9NX57 234 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 ZFR2Q9UPR6 939 aaKnown RBP16.62■□□□□ 0.25
CLK3-223ENST00000568488 PCDHGA7Q9Y5G6 932 aa16.62■□□□□ 0.25
CLK3-223ENST00000568488 COL27A1Q8IZC6 1860 aaPredicted RBP16.61■□□□□ 0.25
CLK3-223ENST00000568488 ALOX15BO15296 676 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 ATP9BO43861 1147 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 GABBR2O75899 941 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 APOEP02649 317 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms