RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 UXTQ9UBK9 157 aaPredicted RBP9.16□□□□□ -0.94
VPS39-207ENST00000563692 DNMT3LQ9UJW3 386 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 NUDT5Q9UKK9 219 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 TRHDEQ9UKU6 1024 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 HBS1LQ9Y450 684 aaKnown RBP9.16□□□□□ -0.94
VPS39-207ENST00000563692 ASB3Q9Y575 518 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 DENND4AQ7Z401 1863 aa9.16□□□□□ -0.94
VPS39-207ENST00000563692 MTCL1Q9Y4B5 1905 aaKnown RBP9.15□□□□□ -0.94
VPS39-207ENST00000563692 A0A0A0MRY4 1105 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 TLDC2A0PJX2 215 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 RASGRF2O14827 1237 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 RGS16O15492 202 aaPredicted RBP9.15□□□□□ -0.94
VPS39-207ENST00000563692 PSMD3O43242 534 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 MSI1O43347 362 aaKnown RBP9.15□□□□□ -0.94
VPS39-207ENST00000563692 MFSD11O43934 449 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 TLR5O60602 858 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 MAP3K6O95382 1288 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 ACSL3O95573 720 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 MOCS2O96007 188 aaPredicted RBP9.15□□□□□ -0.94
VPS39-207ENST00000563692 ABHD2P08910 425 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 ATF6P18850 670 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 MAGEA6P43360 314 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 PGFP49763 221 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 TCF15Q12870 199 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 PDIA2Q13087 525 aaKnown RBP9.15□□□□□ -0.94
VPS39-207ENST00000563692 CBLBQ13191 982 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 PRKD1Q15139 912 aaPredicted RBP9.15□□□□□ -0.94
VPS39-207ENST00000563692 PARP6Q2NL67 630 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 ARHGAP15Q53QZ3 475 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 DNAJC21Q5F1R6 531 aaKnown RBP9.15□□□□□ -0.94
VPS39-207ENST00000563692 PRSS36Q5K4E3 855 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 ANKRD20A2Q5SQ80 823 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 ANKRD20A1Q5TYW2 823 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 ANKRD20A3Q5VUR7 823 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 CWF19L1Q69YN2 538 aaKnown RBP9.15□□□□□ -0.94
VPS39-207ENST00000563692 ITPRIPL1Q6GPH6 555 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 KLHDC10Q6PID8 442 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 B4GALNT4Q76KP1 1039 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 PID1Q7Z2X4 250 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 MIB1Q86YT6 1006 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 ZBED8Q8IZ13 594 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 MCUQ8NE86 351 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 OR2W6PQ8NHA6 318 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 CCDC110Q8TBZ0 833 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 SMARCD2Q92925 531 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 ELSPBP1Q96BH3 223 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 ARL8AQ96BM9 186 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 ZBTB9Q96C00 473 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 HDAC11Q96DB2 347 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 P2RY11Q96G91 374 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 TRMT2BQ96GJ1 504 aaKnown RBP9.15□□□□□ -0.94
VPS39-207ENST00000563692 MYRFLQ96LU7 910 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 SPATA13Q96N96 652 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 PPP1R2P1Q96PQ5 205 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 LGMNQ99538 433 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 RPP25Q9BUL9 199 aaKnown RBP9.15□□□□□ -0.94
VPS39-207ENST00000563692 PPCSQ9HAB8 311 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 ETNK1Q9HBU6 452 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 NINJ2Q9NZG7 142 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 PPARGC1AQ9UBK2 798 aaKnown RBP9.15□□□□□ -0.94
VPS39-207ENST00000563692 SIT1Q9Y3P8 196 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 HS3ST4Q9Y661 456 aa9.15□□□□□ -0.94
VPS39-207ENST00000563692 CACNA1HO95180 2353 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 KRBA1A5PL33 1030 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 ZNF840PA6NDX5 716 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 WASH4PA8MWX3 477 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 E9PAM4 449 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 H0Y858 1186 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 GOLGA8MH3BSY2 632 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 I6L893 689 aaPredicted RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 AP3B1O00203 1094 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 SPAG6O75602 509 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 TCEA3O75764 348 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 APRTP07741 180 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 RHOQP17081 205 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 TPSB2P20231 275 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 CCNCP24863 283 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 HOXC13P31276 330 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 GARSP41250 739 aaKnown RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 SLC11A2P49281 568 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 HARS2P49590 506 aaKnown RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 EPHA5P54756 1037 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 PRKCQQ04759 706 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 PPIDQ08752 370 aaKnown RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 GALNT2Q10471 571 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 PRPSAP1Q14558 356 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 KCNJ11Q14654 390 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 TPSAB1Q15661 275 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 MLF2Q15773 248 aaPredicted RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 SLC44A4Q53GD3 710 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 FAM78AQ5JUQ0 283 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 TIGD7Q6NT04 549 aaPredicted RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 DNAJB7Q7Z6W7 309 aaPredicted RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 YAF2Q8IY57 180 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 CCDC13Q8IYE1 715 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 HS6ST3Q8IZP7 471 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 TAB3Q8N5C8 712 aaPredicted RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 DTWD2Q8NBA8 298 aa9.14□□□□□ -0.95
VPS39-207ENST00000563692 ZSCAN18Q8TBC5 510 aaPredicted RBP9.14□□□□□ -0.95
VPS39-207ENST00000563692 AZIN2Q96A70 460 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms