RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 RTN4RL1Q86UN2 441 aaPredicted RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 SH2D3CQ8N5H7 860 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 P2RY11Q96G91 374 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 DDX23Q9BUQ8 820 aaKnown RBP9.42□□□□□ -0.9
VPS39-205ENST00000562258 CAPS2Q9BXY5 557 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 ATP13A3Q9H7F0 1226 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 CD274Q9NZQ7 290 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 OGFRQ9NZT2 677 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 DCTN4Q9UJW0 460 aa9.42□□□□□ -0.9
VPS39-205ENST00000562258 MCM3APO60318 1980 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 TRBV23OR9-2A0A075B6M9 112 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 A0A0G2JND7 137 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 NVLO15381 856 aaKnown RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 GLP2RO95838 553 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 NR1D1P20393 614 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 PSMD8P48556 350 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 POU5F1Q01860 360 aaKnown RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 GNA12Q03113 381 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 BMPR2Q13873 1038 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 C11orf96Q7Z7L8 435 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 NUDCD3Q8IVD9 361 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 SLC35F5Q8WV83 523 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 PSMG2Q969U7 264 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 PWWP2AQ96N64 755 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 C2orf78A6NCI8 922 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 TRIM49D1C9J1S8 452 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 OPHN1O60890 802 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 FGF19O95750 216 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 CTSAP10619 480 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 PBX2P40425 430 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 JAM2P57087 298 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 ERVFC1P60507 584 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 CAP1Q01518 475 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 TRIP4Q15650 581 aaPredicted RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 SLC45A4Q5BKX6 768 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 TMEM240Q5SV17 173 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 C1orf220Q5T0J3 134 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 ATXN7L2Q5T6C5 722 aaPredicted RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 PAPD7Q5XG87 772 aaKnown RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 TXNRD3NBQ6F5E7 133 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 CCNI2Q6ZMN8 369 aaPredicted RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 ZNF557Q8N988 423 aaPredicted RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 C12orf50Q8NA57 414 aaPredicted RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 FAM71BQ8TC56 605 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 STK32AQ8WU08 396 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 C2orf15Q8WU43 125 aaKnown RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 MCUR1Q96AQ8 359 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 BCO2Q9BYV7 579 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 TRMT6Q9UJA5 497 aaKnown RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 CLCA2Q9UQC9 943 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 COL11A2P13942 1736 aaPredicted RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 LCHNA4D1U4 455 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 IRAK2O43187 625 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 TCF4P15884 667 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 HSPA14Q0VDF9 509 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 ADGRF1Q5T601 910 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 ZNF470Q6ECI4 717 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 RAET1GQ6H3X3 334 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 FBXL22Q6P050 247 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 APTXQ7Z2E3 356 aaKnown RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 SLC39A11Q8N1S5 342 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 ACTRT1Q8TDG2 376 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 CASKIN2Q8WXE0 1202 aa9.41□□□□□ -0.9
VPS39-205ENST00000562258 WRAP53Q9BUR4 548 aaKnown RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 MARCOQ9UEW3 520 aaPredicted RBP9.41□□□□□ -0.9
VPS39-205ENST00000562258 TCRBV7S2A1N4TA0A589 114 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 PDE2AO00408 941 aaPredicted RBP9.4□□□□□ -0.9
VPS39-205ENST00000562258 MFSD11O43934 449 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 SNAP91O60641 907 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 DGKIO75912 1065 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 RB1P06400 928 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 CD72P21854 359 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 GAD2Q05329 585 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 GRSF1Q12849 480 aaKnown RBP eCLIP9.4□□□□□ -0.9
VPS39-205ENST00000562258 MTA1Q13330 715 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 LAMB3Q13751 1172 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 PTK6Q13882 451 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 MBTPS1Q14703 1052 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 TRIM68Q6AZZ1 485 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 OTOAQ7RTW8 1153 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 GPRIN1Q7Z2K8 1008 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 DDIASQ8IXT1 998 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 SPATA22Q8NHS9 363 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 RNF217Q8TC41 542 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 CXorf40AQ8TE69 158 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 OR8D1Q8WZ84 308 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 CASD1Q96PB1 797 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 GPR88Q9GZN0 384 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 TRABDQ9H4I3 376 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 ASB8Q9H765 288 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 MRPS17Q9Y2R5 130 aaKnown RBP9.4□□□□□ -0.9
VPS39-205ENST00000562258 TTC24A2A3L6 582 aaPredicted RBP9.4□□□□□ -0.9
VPS39-205ENST00000562258 SUPT3HB4E1H0 165 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 PRPF4O43172 522 aaKnown RBP eCLIP9.4□□□□□ -0.9
VPS39-205ENST00000562258 SUPT3HO75486 399 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 CYP1A1P04798 512 aaPredicted RBP9.4□□□□□ -0.9
VPS39-205ENST00000562258 UNGP13051 313 aaPredicted RBP9.4□□□□□ -0.9
VPS39-205ENST00000562258 MSH3P20585 1137 aa9.4□□□□□ -0.9
VPS39-205ENST00000562258 STX1BP61266 288 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms