RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 C11orf57Q6ZUT1 292 aaPredicted RBP9.42□□□□□ -0.9
HDDC3-204ENST00000559834 CIR1Q86X95 450 aaPredicted RBP9.42□□□□□ -0.9
HDDC3-204ENST00000559834 CREBRFQ8IUR6 639 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 LSM14AQ8ND56 463 aaKnown RBP9.42□□□□□ -0.9
HDDC3-204ENST00000559834 TMIEQ8NEW7 156 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 FAM174AQ8TBP5 190 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 RFFLQ8WZ73 363 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 ALG14Q96F25 216 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 PPP1R13BQ96KQ4 1090 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 BBC3Q96PG8 261 aaPredicted RBP9.42□□□□□ -0.9
HDDC3-204ENST00000559834 SLC2A13Q96QE2 648 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 C2orf49Q9BVC5 232 aaPredicted RBP9.42□□□□□ -0.9
HDDC3-204ENST00000559834 MUC3BQ9H195 1237 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 WDCPQ9H6R7 721 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 DYRK4Q9NR20 520 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 EVA1BQ9NVM1 165 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 KLHL11Q9NVR0 708 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 RRN3Q9NYV6 651 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 SARDHQ9UL12 918 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 CTNND2Q9UQB3 1225 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 TBC1D30Q9Y2I9 924 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 PAXBP1Q9Y5B6 917 aa9.42□□□□□ -0.9
HDDC3-204ENST00000559834 COL5A1P20908 1838 aaPredicted RBP9.42□□□□□ -0.9
HDDC3-204ENST00000559834 DMXL2Q8TDJ6 3036 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 NEMP2A6NFY4 417 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 SLC31A1O15431 190 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 SIGLEC6O43699 453 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 MT-CO3P00414 261 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 F9P00740 461 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 PRNPP04156 253 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 ITPKBP27987 946 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 AKT2P31751 481 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 CHRNA3P32297 505 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 NOS2P35228 1153 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 KRT9P35527 623 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 RECQLP46063 649 aaPredicted RBP9.41□□□□□ -0.9
HDDC3-204ENST00000559834 NUMBP49757 651 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 CLCN6P51797 869 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 METAP1P53582 386 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 CLDN6P56747 220 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 STX17P56962 302 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 PITX1P78337 314 aaPredicted RBP9.41□□□□□ -0.9
HDDC3-204ENST00000559834 MORC3Q14149 939 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 ARHGAP44Q17R89 818 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 PROX2Q3B8N5 592 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 POM121L1PQ3SYA9 428 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 AGBL4Q5VU57 503 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 OR6B2Q6IFH4 312 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 LRRC31Q6UY01 552 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 GBP6Q6ZN66 633 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 Q6ZVU0 165 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 KANSL1Q7Z3B3 1105 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 SETD3Q86TU7 594 aaPredicted RBP9.41□□□□□ -0.9
HDDC3-204ENST00000559834 DCP2Q8IU60 420 aaKnown RBP9.41□□□□□ -0.9
HDDC3-204ENST00000559834 WDTC1Q8N5D0 677 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 SH2D3CQ8N5H7 860 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 DCBLD1Q8N8Z6 715 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 ATP11CQ8NB49 1132 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 SNIP1Q8TAD8 396 aaKnown RBP9.41□□□□□ -0.9
HDDC3-204ENST00000559834 SLC39A7Q92504 469 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 CRACR2AQ9BSW2 395 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 SIK2Q9H0K1 926 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 PRORYQ9H606 182 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 SYNCQ9H7C4 482 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 VANGL2Q9ULK5 521 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 PCDHGC3Q9UN70 934 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 HS3ST2Q9Y278 367 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 OR51B4Q9Y5P0 310 aa9.41□□□□□ -0.9
HDDC3-204ENST00000559834 ZZEF1O43149 2961 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 A0A1W2PQU0 124 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 M0QYT0 321 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 BIN1O00499 593 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 KPNA3O00505 521 aaPredicted RBP9.4□□□□□ -0.9
HDDC3-204ENST00000559834 TRIM38O00635 465 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 ATXN7O15265 892 aaPredicted RBP9.4□□□□□ -0.9
HDDC3-204ENST00000559834 TLX3O43711 291 aaPredicted RBP9.4□□□□□ -0.9
HDDC3-204ENST00000559834 SDC3O75056 442 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 PAGE1O75459 146 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 GRAP2O75791 330 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 PCDH8O95206 1070 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 RHOCP08134 193 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 THEGLP0DJG4 465 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 ALPPL2P10696 532 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 BMP6P22004 513 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 HNRNPA2B1P22626 353 aaKnown RBP9.4□□□□□ -0.9
HDDC3-204ENST00000559834 DGKAP23743 735 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 DUSP3P51452 185 aaPredicted RBP9.4□□□□□ -0.9
HDDC3-204ENST00000559834 BPIFB4P59827 614 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 INSM1Q01101 510 aaPredicted RBP9.4□□□□□ -0.9
HDDC3-204ENST00000559834 SLC6A3Q01959 620 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 CENPCQ03188 943 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 KCNMA1Q12791 1236 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 BECN1Q14457 450 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 C5orf22Q49AR2 442 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 BRMS1LQ5PSV4 323 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 TRIM65Q6PJ69 517 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 SLC26A9Q7LBE3 791 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 GPR155Q7Z3F1 870 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 HORMAD1Q86X24 394 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 ZDHHC17Q8IUH5 632 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms