RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 ALLCQ8N6M5 410 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 DCAF4L2Q8NA75 395 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 HTR3CQ8WXA8 447 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 DNASE1L2Q92874 299 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 ARHGEF2Q92974 986 aaKnown RBP12.69□□□□□ -0.38
TPM1-209ENST00000558072 RTP4Q96DX8 246 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 SLC39A8Q9C0K1 460 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 DDX47Q9H0S4 455 aaKnown RBP12.69□□□□□ -0.38
TPM1-209ENST00000558072 LINC00597Q9H2U6 94 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 C8orf33Q9H7E9 229 aaPredicted RBP12.69□□□□□ -0.38
TPM1-209ENST00000558072 ATP13A1Q9HD20 1204 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 ETNK2Q9NVF9 386 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 PAK5Q9P286 719 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 DEC1Q9P2X7 70 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 ZNF212Q9UDV6 495 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 LIMD1Q9UGP4 676 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 VPS28Q9UK41 221 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 SLC27A6Q9Y2P4 619 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 DOCK4Q8N1I0 1966 aa12.69□□□□□ -0.38
TPM1-209ENST00000558072 TICRRQ7Z2Z1 1910 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 TARSL2A2RTX5 802 aaKnown RBP12.68□□□□□ -0.38
TPM1-209ENST00000558072 C5orf60A6NFR6 353 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 PSMD3O43242 534 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 NARSO43776 548 aaKnown RBP12.68□□□□□ -0.38
TPM1-209ENST00000558072 ASLP04424 464 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 CYP17A1P05093 508 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 ATP5BP06576 529 aaKnown RBP12.68□□□□□ -0.38
TPM1-209ENST00000558072 GDI1P31150 447 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 DGKGP49619 791 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 DRG2P55039 364 aaKnown RBP12.68□□□□□ -0.38
TPM1-209ENST00000558072 TNK2Q07912 1038 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 SNX1Q13596 522 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 EIF4HQ15056 248 aaKnown RBP12.68□□□□□ -0.38
TPM1-209ENST00000558072 INO80DQ53TQ3 878 aaPredicted RBP12.68□□□□□ -0.38
TPM1-209ENST00000558072 IER5LQ5T953 404 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 RNF219Q5W0B1 726 aaPredicted RBP12.68□□□□□ -0.38
TPM1-209ENST00000558072 NAIF1Q69YI7 327 aaPredicted RBP12.68□□□□□ -0.38
TPM1-209ENST00000558072 ARHGAP12Q8IWW6 846 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.68□□□□□ -0.38
TPM1-209ENST00000558072 UCMAQ8WVF2 138 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.68□□□□□ -0.38
TPM1-209ENST00000558072 BHMTQ93088 406 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 CELF6Q96J87 481 aaKnown RBP12.68□□□□□ -0.38
TPM1-209ENST00000558072 HERPUD2Q9BSE4 406 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 FEM1AQ9BSK4 669 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 SPON2Q9BUD6 331 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 ACE2Q9BYF1 805 aaPredicted RBP12.68□□□□□ -0.38
TPM1-209ENST00000558072 KLC2Q9H0B6 622 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 PCDH9Q9HC56 1237 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 SMARCAL1Q9NZC9 954 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 FBXO10Q9UK96 956 aa12.68□□□□□ -0.38
TPM1-209ENST00000558072 R3HDM2Q9Y2K5 976 aaKnown RBP12.68□□□□□ -0.38
TPM1-209ENST00000558072 NPC1O15118 1278 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 KCNN4O15554 427 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 MAFKO60675 156 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 PRAMEF11O60813 436 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 GCATO75600 419 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 PABPC1P11940 636 aaKnown RBP12.67□□□□□ -0.38
TPM1-209ENST00000558072 CCNB1P14635 433 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 POLR2EP19388 210 aaKnown RBP12.67□□□□□ -0.38
TPM1-209ENST00000558072 FDFT1P37268 417 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 VASPP50552 380 aaPredicted RBP12.67□□□□□ -0.38
TPM1-209ENST00000558072 CLCN6P51797 869 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 IFI35P80217 286 aaPredicted RBP12.67□□□□□ -0.38
TPM1-209ENST00000558072 CAV1Q03135 178 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 ZP2Q05996 745 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 SLC10A2Q12908 348 aaPredicted RBP12.67□□□□□ -0.38
TPM1-209ENST00000558072 PTK6Q13882 451 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 PRPSAP1Q14558 356 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 RALGPS1Q5JS13 557 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 ARTNQ5T4W7 220 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 MARC1Q5VT66 337 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 GRAMD4Q6IC98 578 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 CXorf57Q6NSI4 855 aaKnown RBP12.67□□□□□ -0.38
TPM1-209ENST00000558072 NPNTQ6UXI9 565 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 ARHGEF18Q6ZSZ5 1173 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 CEP128Q6ZU80 1094 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 IFT20Q8IY31 132 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 NPWQ8N729 165 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 EIF1ADQ8N9N8 165 aaKnown RBP12.67□□□□□ -0.38
TPM1-209ENST00000558072 NETO2Q8NC67 525 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 ATG4AQ8WYN0 398 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 HMCESQ96FZ2 354 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 TMEM121Q9BTD3 319 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 TSPYL1Q9H0U9 437 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 EBF3Q9H4W6 596 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 CD320Q9NPF0 282 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 SAE1Q9UBE0 346 aaPredicted RBP12.67□□□□□ -0.38
TPM1-209ENST00000558072 UBA2Q9UBT2 640 aaPredicted RBP12.67□□□□□ -0.38
TPM1-209ENST00000558072 SEPT3Q9UH03 358 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 SLC25A13Q9UJS0 675 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 GGA2Q9UJY4 613 aa12.67□□□□□ -0.38
TPM1-209ENST00000558072 A0A0A0MRY4 1105 aa12.66□□□□□ -0.38
TPM1-209ENST00000558072 AP3B1O00203 1094 aa12.66□□□□□ -0.38
TPM1-209ENST00000558072 IFNB1P01574 187 aa12.66□□□□□ -0.38
TPM1-209ENST00000558072 KRT14P02533 472 aa12.66□□□□□ -0.38
TPM1-209ENST00000558072 RBL1P28749 1068 aa12.66□□□□□ -0.38
TPM1-209ENST00000558072 TNNT3P45378 269 aaPredicted RBP12.66□□□□□ -0.38
TPM1-209ENST00000558072 MAPK8P45983 427 aa12.66□□□□□ -0.38
TPM1-209ENST00000558072 TERF1P54274 439 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 136.9 ms