RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 ENDOVQ8N8Q3 282 aaKnown RBP4.18□□□□□ -1.74
SCFD1-216ENST00000555550 ELP5Q8TE02 316 aa4.18□□□□□ -1.74
SCFD1-216ENST00000555550 CPT1BQ92523 772 aa4.18□□□□□ -1.74
SCFD1-216ENST00000555550 C3orf49Q96BT1 292 aa4.18□□□□□ -1.74
SCFD1-216ENST00000555550 WDR12Q9GZL7 423 aaKnown RBP4.18□□□□□ -1.74
SCFD1-216ENST00000555550 PNRC2Q9NPJ4 139 aaKnown RBP4.18□□□□□ -1.74
SCFD1-216ENST00000555550 CD93Q9NPY3 652 aa4.18□□□□□ -1.74
SCFD1-216ENST00000555550 CHST12Q9NRB3 414 aa4.18□□□□□ -1.74
SCFD1-216ENST00000555550 NCKIPSDQ9NZQ3 722 aa4.18□□□□□ -1.74
SCFD1-216ENST00000555550 BAG5Q9UL15 447 aa4.18□□□□□ -1.74
SCFD1-216ENST00000555550 MYO6Q9UM54 1294 aa4.18□□□□□ -1.74
SCFD1-216ENST00000555550 DTX4Q9Y2E6 619 aa4.18□□□□□ -1.74
SCFD1-216ENST00000555550 KIF26BQ2KJY2 2108 aa4.18□□□□□ -1.74
SCFD1-216ENST00000555550 TCRBV7S3A2A0A539 114 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 GAGE12JA6NER3 117 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 GSTM2P28161 218 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 SERPINB3P29508 390 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 GPR18Q14330 331 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 BRD3Q15059 726 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 PRAMEF19Q5SWL8 479 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 AAGABQ6PD74 315 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 C1orf228Q6PIY5 440 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 KIAA1324Q6UXG2 1013 aaKnown RBP4.17□□□□□ -1.74
SCFD1-216ENST00000555550 SYNE3Q6ZMZ3 975 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 SLC16A12Q6ZSM3 486 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 MYLK4Q86YV6 388 aaPredicted RBP4.17□□□□□ -1.74
SCFD1-216ENST00000555550 CAMK1DQ8IU85 385 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 SLC44A2Q8IWA5 706 aaPredicted RBP4.17□□□□□ -1.74
SCFD1-216ENST00000555550 TMEM217Q8N7C4 229 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 CMASQ8NFW8 434 aaPredicted RBP4.17□□□□□ -1.74
SCFD1-216ENST00000555550 OR1N1Q8NGS0 311 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 KCNJ9Q92806 393 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 CRB3Q9BUF7 120 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 HDHD5Q9BXW7 423 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 TRIM31Q9BZY9 425 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 MAGEH1Q9H213 219 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 KRCC1Q9NPI7 259 aaPredicted RBP4.17□□□□□ -1.74
SCFD1-216ENST00000555550 RNF146Q9NTX7 359 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 DAPP1Q9UN19 280 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 C19orf53Q9UNZ5 99 aaPredicted RBP4.17□□□□□ -1.74
SCFD1-216ENST00000555550 PKP3Q9Y446 797 aa4.17□□□□□ -1.74
SCFD1-216ENST00000555550 GRM8O00222 908 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 SYT5O00445 386 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 HEXIM1O94992 359 aaKnown RBP4.16□□□□□ -1.74
SCFD1-216ENST00000555550 HOXB9P17482 250 aaPredicted RBP4.16□□□□□ -1.74
SCFD1-216ENST00000555550 SERPINA4P29622 427 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 PDIA3P30101 505 aaKnown RBP4.16□□□□□ -1.74
SCFD1-216ENST00000555550 RFX2P48378 723 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 COMPP49747 757 aaPredicted RBP4.16□□□□□ -1.74
SCFD1-216ENST00000555550 TMPRSS3P57727 454 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 RHAGQ02094 409 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 EGR4Q05215 589 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 CDK18Q07002 472 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 OTUD3Q5T2D3 398 aaPredicted RBP4.16□□□□□ -1.74
SCFD1-216ENST00000555550 FAM171A1Q5VUB5 890 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 SULT6B1Q6IMI4 303 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 RINLQ6ZS11 566 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 VPS52Q8N1B4 723 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 LRRC57Q8N9N7 239 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 GABPB2Q8TAK5 448 aaPredicted RBP4.16□□□□□ -1.74
SCFD1-216ENST00000555550 FAM110DQ8TAY7 271 aaPredicted RBP4.16□□□□□ -1.74
SCFD1-216ENST00000555550 EID2BQ96D98 161 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 LTV1Q96GA3 475 aaPredicted RBP4.16□□□□□ -1.74
SCFD1-216ENST00000555550 PIGSQ96S52 555 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 ACTR5Q9H9F9 607 aaPredicted RBP4.16□□□□□ -1.74
SCFD1-216ENST00000555550 IL21RQ9HBE5 538 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 DACT1Q9NYF0 836 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 WNT16Q9UBV4 365 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 LZTS1Q9Y250 596 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 SLC4A4Q9Y6R1 1079 aa4.16□□□□□ -1.74
SCFD1-216ENST00000555550 SAC3D1A6NKF1 404 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 F5H423 210 aaPredicted RBP4.15□□□□□ -1.75
SCFD1-216ENST00000555550 PKMP14618 531 aaKnown RBP4.15□□□□□ -1.75
SCFD1-216ENST00000555550 PRPH2P23942 346 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 SERPINF1P36955 418 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 ROR2Q01974 943 aaKnown RBP4.15□□□□□ -1.75
SCFD1-216ENST00000555550 ZBTB16Q05516 673 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 ALKBH1Q13686 389 aaKnown RBP4.15□□□□□ -1.75
SCFD1-216ENST00000555550 IZUMO4Q1ZYL8 232 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 GALNTL6Q49A17 601 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 C5orf22Q49AR2 442 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 OTUD1Q5VV17 481 aaPredicted RBP4.15□□□□□ -1.75
SCFD1-216ENST00000555550 TOGARAM2Q6ZUX3 1019 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 RRAGAQ7L523 313 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 CADM3Q8N126 398 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 SCAMP5Q8TAC9 235 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 ARRDC3Q96B67 414 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 TRAPPC9Q96Q05 1148 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 RMDN3Q96TC7 470 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 POLDIP3Q9BY77 421 aaKnown RBP4.15□□□□□ -1.75
SCFD1-216ENST00000555550 B3GNT4Q9C0J1 378 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 PABPC3Q9H361 631 aaKnown RBP4.15□□□□□ -1.75
SCFD1-216ENST00000555550 HIPK3Q9H422 1215 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 PLAC1Q9HBJ0 212 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 PLK2Q9NYY3 685 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 NDUFAF4Q9P032 175 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 RAP2CQ9Y3L5 183 aa4.15□□□□□ -1.75
SCFD1-216ENST00000555550 TRBV5-7A0A0A0MS05 114 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 ABHD14A-ACY1A0A1B0GW23 586 aa4.14□□□□□ -1.75
SCFD1-216ENST00000555550 HMX3A6NHT5 357 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms