RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 KDM1BQ8NB78 822 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 NETO2Q8NC67 525 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 NTAN1Q96AB6 310 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 TBC1D31Q96DN5 1066 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 ZNF419Q96HQ0 510 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 KLC2Q9H0B6 622 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 TNKS2Q9H2K2 1166 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 PABPC3Q9H361 631 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 C6orf106Q9H6K1 298 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 NOL6Q9H6R4 1146 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 PPARGC1AQ9UBK2 798 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 PILRBQ9UKJ0 227 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 SARDHQ9UL12 918 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 NENFQ9UMX5 172 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 CACNA1AO00555 2505 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 NCOR2Q9Y618 2525 aa11.87□□□□□ -0.51
CCDC88C-208ENST00000554165 A0A1W2PP55 124 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 LNP1A1A4G5 178 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 ILVBLA1L0T0 632 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 TARSL2A2RTX5 802 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 DCDC2BA2VCK2 349 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 CBFA2T2O43439 604 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 ATP9BO43861 1147 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 CREB3O43889 395 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 CD160O95971 181 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 DNTTP04053 509 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 C7P10643 843 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 MIPP30301 263 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 HNRNPH3P31942 346 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 SLC8A1P32418 973 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 GFPT1Q06210 699 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 SULT2A1Q06520 285 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 SEMA3BQ13214 749 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 EFHC2Q5JST6 749 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 CCDC122Q5T0U0 273 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 C6orf118Q5T5N4 469 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 ALKBH5Q6P6C2 394 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 SYT12Q8IV01 421 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 C12orf50Q8NA57 414 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 DCAF4L2Q8NA75 395 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 ATP11CQ8NB49 1132 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 CHST14Q8NCH0 376 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 OR2I1PQ8NGU4 316 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 GANCQ8TET4 914 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 DNAJC7Q99615 494 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 CHP1Q99653 195 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 PACSIN1Q9BY11 444 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 NEUROG2Q9H2A3 272 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 ATP13A1Q9HD20 1204 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 TMEM51Q9NW97 253 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 TMEM248Q9NWD8 314 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 FBXL12Q9NXK8 326 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 SLC25A13Q9UJS0 675 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 HS3ST2Q9Y278 367 aa11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 BZW2Q9Y6E2 419 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-208ENST00000554165 FAM47DPA6NHR8 397 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 METTL12A8MUP2 240 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 ABCB7O75027 752 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 LRCH4O75427 683 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 ZNF821O75541 412 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 IL1BP01584 269 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 CFIP05156 583 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 CYP1A2P05177 515 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 TPM3P06753 285 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 CTSLP07711 333 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 IL1R2P27930 398 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 EPHB2P29323 1055 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 L1CAMP32004 1257 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 NNMTP40261 264 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 GALCP54803 685 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 ARF5P84085 180 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 ASTE1Q2TB18 679 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 TRIM61Q5EBN2 209 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 SPDYCQ5MJ68 293 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 ACBD5Q5T8D3 534 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 DCAF12L1Q5VU92 463 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 TXNRD3NBQ6F5E7 133 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 PPP1R2P3Q6NXS1 205 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 RGL4Q8IZJ4 473 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 OR8K1Q8NGG5 319 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 ARHGEF2Q92974 986 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 IQCDQ96DY2 449 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 KCTD15Q96SI1 283 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 SNRNP25Q9BV90 132 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 C2orf49Q9BVC5 232 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 ACE2Q9BYF1 805 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 MIR1-1HGQ9H1L0 117 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 DHX35Q9H5Z1 703 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 FBRSQ9HAH7 460 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 DLL3Q9NYJ7 618 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 CDV3Q9UKY7 258 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 AP4E1Q9UPM8 1137 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 FCF1Q9Y324 198 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 CACNA1EQ15878 2313 aa11.85□□□□□ -0.51
CCDC88C-208ENST00000554165 ASCC3Q8N3C0 2202 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 ADAMTS9Q9P2N4 1935 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 CDX4O14627 284 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 KHNYNO15037 678 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 RNASEH1O60930 286 aaKnown RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms