RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-215	ENST00000547672	PRKCH	P24723	683 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	SSTR1	P30872	391 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	IRAK1	P51617	712 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	GYS2	P54840	703 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	GNGT1	P63211	74 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	CDH17	Q12864	832 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	DNAJC3	Q13217	504 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	MPP3	Q13368	585 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	FASTKD3	Q14CZ7	662 aa	Known RBP	13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	SPANXN3	Q5MJ09	141 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	PPM1L	Q5SGD2	360 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	SLC26A11	Q86WA9	606 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	ZNF354C	Q86Y25	554 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	CCDC33	Q8N5R6	958 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	PTCD2	Q8WV60	388 aa	Known RBP	13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	CFAP36	Q96G28	342 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	XPO6	Q96QU8	1125 aa	Known RBP	13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	SMC6	Q96SB8	1091 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	TCF25	Q9BQ70	676 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	SLC25A51	Q9H1U9	297 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	CASS4	Q9NQ75	786 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	TLR9	Q9NR96	1032 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	STOML2	Q9UJZ1	356 aa		13.72	□□□□□ -0.21
PTCH1-215	ENST00000547672	CENPF	P49454	3210 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	TRAV19	A0A0A6YYK7	116 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672		A0A1B0GVM2	712 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	TCRBV9S1A1T	A0A576	114 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	TCAF2	A6NFQ2	919 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	XYLB	O75191	536 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	HNRNPA1	P09651	372 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	NFKB1	P19838	968 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	CORO1A	P31146	461 aa	Known RBP	13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	HOXA9	P31269	272 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	ATP1A2	P50993	1020 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	NRL	P54845	237 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	SERINC3	Q13530	473 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	ARHGAP15	Q53QZ3	475 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	STEAP4	Q687X5	459 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	KCTD11	Q693B1	232 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	EXOC3L1	Q86VI1	746 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	DENND1C	Q8IV53	801 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	TEX26	Q8N6G2	289 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	MICAL1	Q8TDZ2	1067 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	SLC44A1	Q8WWI5	657 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	SELENOS	Q9BQE4	189 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	DHRS4	Q9BTZ2	278 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	ASAH2	Q9NR71	780 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	INTS9	Q9NV88	658 aa	Known RBP	13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	NSMCE4A	Q9NXX6	385 aa		13.71	□□□□□ -0.21
PTCH1-215	ENST00000547672	AVIL	O75366	819 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	MT-ND3	P03897	115 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	C8A	P07357	584 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	SNRPA	P09012	282 aa	Known RBP	13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	BRAF	P15056	766 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	PTPN2	P17706	415 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	KCNQ1	P51787	676 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	SLC7A9	P82251	487 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	SMAD3	P84022	425 aa	Known RBP	13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	GAD2	Q05329	585 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	ZBTB17	Q13105	803 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	TMED2	Q15363	201 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	SLC14A2	Q15849	920 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	SEPT7	Q16181	437 aa	Known RBP	13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	POTEH	Q6S545	545 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	TFAP2D	Q7Z6R9	452 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	ZNF557	Q8N988	423 aa	Predicted RBP	13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	HJURP	Q8NCD3	748 aa	Predicted RBP	13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	SPPL3	Q8TCT6	385 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	AUTS2	Q8WXX7	1259 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	DPF3	Q92784	378 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	IGSF8	Q969P0	613 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	ZBTB9	Q96C00	473 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	SGSM3	Q96HU1	749 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	PAFAH2	Q99487	392 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	KCNK9	Q9NPC2	374 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	TXNDC16	Q9P2K2	825 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	FAM169A	Q9Y6X4	670 aa		13.7	□□□□□ -0.22
PTCH1-215	ENST00000547672	FAM237B	A0A1B0GVD1	139 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	C2orf71	A6NGG8	1288 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	ZNF197	O14709	1029 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	PRPF4	O43172	522 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	PRAMEF11	O60813	436 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	ALDH1A2	O94788	518 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	OLFM2	O95897	454 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	POU2F2	P09086	479 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	PAM	P19021	973 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	GABRR2	P28476	465 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	CD68	P34810	354 aa	Predicted RBP	13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	SESN2	P58004	480 aa	Predicted RBP	13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	GNA12	Q03113	381 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	MGAT5	Q09328	741 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	ALF	Q53S48	1182 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	MPP7	Q5T2T1	576 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	NADSYN1	Q6IA69	706 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	UNC5A	Q6ZN44	842 aa		13.69	□□□□□ -0.22
PTCH1-215	ENST00000547672	CAPN12	Q6ZSI9	719 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms