RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 AGAP3Q96P47 875 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 ARHGAP39Q9C0H5 1083 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 NKX2-4Q9H2Z4 354 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 KCNH7Q9NS40 1196 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 IMPAD1Q9NX62 359 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 CRLS1Q9UJA2 301 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 C15orf41Q9Y2V0 281 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 LRRC10BA6NIK2 292 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 CXCR2P25025 360 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 KLRC1P26715 233 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 CDC25AP30304 524 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 PTPN5P54829 565 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 TBL3Q12788 808 aaKnown RBP7.95□□□□□ -1.14
VPS13D-211ENST00000543710 STK4Q13043 487 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 WDR72Q3MJ13 1102 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 INTS5Q6P9B9 1019 aaKnown RBP7.95□□□□□ -1.14
VPS13D-211ENST00000543710 HDDC2Q7Z4H3 204 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 ADHFE1Q8IWW8 467 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 ATL1Q8WXF7 558 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 SMARCD1Q96GM5 515 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 CCDC3Q9BQI4 270 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 EHD1Q9H4M9 534 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 RGS18Q9NS28 235 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 TNFSF13BQ9Y275 285 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 ACOT9Q9Y305 439 aa7.95□□□□□ -1.14
VPS13D-211ENST00000543710 A0A1W2PQ67 120 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 APOC4-APOC2K7ER74 178 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 RNF103O00237 685 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 LCA5LO95447 670 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 APOC2P02655 101 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 COL6A2P12110 1019 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 COX10Q12887 443 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 LACTB2Q53H82 288 aaPredicted RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 MTX3Q5HYI7 312 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 TRAF7Q6Q0C0 670 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 NKAPQ8N5F7 415 aaKnown RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 FAM71DQ8N9W8 422 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 RNF145Q96MT1 663 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 GINS4Q9BRT9 223 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 LRRC19Q9H756 370 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 MTF2Q9Y483 593 aaPredicted RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 ESYT3A0FGR9 886 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 NEMP2A6NFY4 417 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 DDHD2O94830 711 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 SLC4A1P02730 911 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 WARSP23381 471 aaKnown RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 HNRNPH3P31942 346 aaKnown RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 SCNN1BP51168 640 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 CHN2P52757 468 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 DLG4P78352 724 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 FAM171A1Q5VUB5 890 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 SH3BP5LQ7L8J4 393 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 MAP4K3Q8IVH8 894 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 KBTBD8Q8NFY9 601 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 HELQQ8TDG4 1101 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 CKAP2Q8WWK9 683 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 FBXO32Q969P5 355 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 DNAJC1Q96KC8 554 aaKnown RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 TMEM109Q9BVC6 243 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 OSBPL11Q9BXB4 747 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 GPR63Q9BZJ6 419 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 UNC93B1Q9H1C4 597 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 SEMA6BQ9H3T3 888 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 PCDH10Q9P2E7 1040 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 GNPTGQ9UJJ9 305 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 VANGL2Q9ULK5 521 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 RAB26Q9ULW5 256 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 DMTF1Q9Y222 760 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 TMEM191CA6NGB0 347 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 VGLL3A8MV65 326 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 FAM25AB3EWG3 89 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 FAM25CB3EWG5 89 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 FAM25GB3EWG6 89 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 OR56A5P0C7T3 313 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 RBP3P10745 1247 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 ALOX15P16050 662 aaPredicted RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 TCF7P36402 384 aaPredicted RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 SESN2P58004 480 aaPredicted RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 CSNK2BP67870 215 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 MRPS6P82932 125 aaKnown RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 TMEM62Q0P6H9 643 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 RIPK1Q13546 671 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF846Q147U1 533 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 MTF1Q14872 753 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 TJAP1Q5JTD0 557 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 IYDQ6PHW0 289 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 METTL7BQ6UX53 244 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 LRRC74BQ6ZQY2 392 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 PSTKQ8IV42 348 aaKnown RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 UNC5BQ8IZJ1 945 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 DIS3LQ8TF46 1054 aaKnown RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 GDPD5Q8WTR4 605 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 ZFYVE19Q96K21 471 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 PNKPQ96T60 521 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 GMIPQ9P107 970 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 AP4E1Q9UPM8 1137 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 CRYL1Q9Y2S2 319 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 TSC22D4Q9Y3Q8 395 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 H3BNX3 289 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 AIM2O14862 343 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms