RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 SYN3O14994 580 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 ADRA1DP25100 572 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 CD68P34810 354 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-210ENST00000538120 SLC11A1P49279 550 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 PRMT2P55345 433 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 TBX4P57082 545 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 SESN3P58005 492 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 USP46P62068 366 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 HTRA3P83110 453 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 ZBTB17Q13105 803 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 BIRC2Q13490 618 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 BFSP2Q13515 415 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 KHDC1Q4VXA5 237 aaKnown RBP10.98□□□□□ -0.65
CLIP1-210ENST00000538120 STEAP4Q687X5 459 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 SDE2Q6IQ49 451 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 NLRP9Q7RTR0 991 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 PID1Q7Z2X4 250 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 TTC9BQ8N6N2 239 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 RFWD2Q8NHY2 731 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 ARNTL2Q8WYA1 636 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 ZNF75CPQ92670 426 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-210ENST00000538120 INPP5DQ92835 1189 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 WNT2BQ93097 391 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 HDAC11Q96DB2 347 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 PRR11Q96HE9 360 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-210ENST00000538120 OXNAD1Q96HP4 312 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-210ENST00000538120 FUBP3Q96I24 572 aaKnown RBP eCLIP10.98□□□□□ -0.65
CLIP1-210ENST00000538120 C8orf48Q96LL4 319 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 PIH1D1Q9NWS0 290 aaKnown RBP10.98□□□□□ -0.65
CLIP1-210ENST00000538120 ADAM28Q9UKQ2 775 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 SCML2Q9UQR0 700 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 PCDHB7Q9Y5E2 793 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 MAD1L1Q9Y6D9 718 aa10.98□□□□□ -0.65
CLIP1-210ENST00000538120 WDR27A2RRH5 827 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 FAM159BA6NKW6 160 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 NCAM2O15394 837 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 PAGE1O75459 146 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 DCTN3O75935 186 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 ATP5HO75947 161 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 CSH1P0DML2 217 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 CSH2P0DML3 217 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 FGFR3P22607 806 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 CYP2C18P33260 490 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 GARSP41250 739 aaKnown RBP10.97□□□□□ -0.65
CLIP1-210ENST00000538120 OLIG2Q13516 323 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 CTC1Q2NKJ3 1217 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 BRMS1LQ5PSV4 323 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 THEMIS2Q5TEJ8 643 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 MANEALQ5VSG8 457 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 FAM171A1Q5VUB5 890 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 RSPO2Q6UXX9 243 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-210ENST00000538120 SLC26A11Q86WA9 606 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 PPM1NQ8N819 430 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 GSDMBQ8TAX9 411 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 CELF6Q96J87 481 aaKnown RBP10.97□□□□□ -0.65
CLIP1-210ENST00000538120 PGLYRP2Q96PD5 576 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 HAPLN3Q96S86 360 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 BRD8Q9H0E9 1235 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 MOCS1Q9NZB8 636 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 ZFP69BQ9UJL9 534 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-210ENST00000538120 GOLGA8CPA6NN73 597 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 KCNU1A8MYU2 1149 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 ZBTB24O43167 697 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-210ENST00000538120 VNN2O95498 520 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 INHBAP08476 426 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 MGAT1P26572 445 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 ALDH3A1P30838 453 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 HOXC13P31276 330 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 CRADDP78560 199 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 SLC18A2Q05940 514 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 NFE2Q16621 373 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-210ENST00000538120 CTXN3Q4LDR2 81 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 HHATQ5VTY9 493 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 RGS9BPQ6ZS82 235 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 ARHGAP12Q8IWW6 846 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 UNC5BQ8IZJ1 945 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 NUP93Q8N1F7 819 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 ZNF276Q8N554 614 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 ATAD1Q8NBU5 361 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 SNRNP27Q8WVK2 155 aaKnown RBP10.97□□□□□ -0.65
CLIP1-210ENST00000538120 PBXIP1Q96AQ6 731 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 KCTD12Q96CX2 325 aaKnown RBP10.97□□□□□ -0.65
CLIP1-210ENST00000538120 SIK2Q9H0K1 926 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 IL37Q9NZH6 218 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 KLHL8Q9P2G9 620 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-210ENST00000538120 KLF15Q9UIH9 416 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 ZNF180Q9UJW8 692 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 TRIM17Q9Y577 477 aa10.97□□□□□ -0.65
CLIP1-210ENST00000538120 IQANK1A0A1B0GTG1 560 aa10.96□□□□□ -0.65
CLIP1-210ENST00000538120 HMX2A2RU54 273 aa10.96□□□□□ -0.65
CLIP1-210ENST00000538120 SDR42E2A6NKP2 422 aa10.96□□□□□ -0.65
CLIP1-210ENST00000538120 LIN7AO14910 233 aaPredicted RBP10.96□□□□□ -0.65
CLIP1-210ENST00000538120 TBC1D4O60343 1298 aa10.96□□□□□ -0.65
CLIP1-210ENST00000538120 ALDH1A2O94788 518 aa10.96□□□□□ -0.65
CLIP1-210ENST00000538120 MT-ND3P03897 115 aa10.96□□□□□ -0.65
CLIP1-210ENST00000538120 SRGAP2BP0DMP2 458 aa10.96□□□□□ -0.65
CLIP1-210ENST00000538120 MX2P20592 715 aa10.96□□□□□ -0.65
CLIP1-210ENST00000538120 ATP6V1C1P21283 382 aa10.96□□□□□ -0.65
CLIP1-210ENST00000538120 MAGEA11P43364 429 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms