RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 F8W810 466 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 TULP2O00295 520 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 FANCGO15287 622 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 HDAC3O15379 428 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 SH3BGRLO75368 114 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 WDR47O94967 919 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 COX4I1P13073 169 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 CCNB1P14635 433 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 MATKP42679 507 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 GSSP48637 474 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 SERPINH1P50454 418 aaKnown RBP12.88□□□□□ -0.35
USP53-209ENST00000514665 CCNG1P51959 295 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 TAF5Q15542 800 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 ADRM1Q16186 407 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 FSCN1Q16658 493 aaKnown RBP12.88□□□□□ -0.35
USP53-209ENST00000514665 TRIM16LQ309B1 348 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 PCID2Q5JVF3 399 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 FNBP1LQ5T0N5 605 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 PACS1Q6VY07 963 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 ATG16L2Q8NAA4 619 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 DDHD1Q8NEL9 900 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 MPP4Q96JB8 637 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 SIKE1Q9BRV8 207 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 GRIP2Q9C0E4 1043 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 SNX15Q9NRS6 342 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 XPR1Q9UBH6 696 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 RAD54BQ9Y620 910 aa12.88□□□□□ -0.35
USP53-209ENST00000514665 RUNX1T1Q06455 604 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 SAMD4BQ5PRF9 694 aaKnown RBP12.87□□□□□ -0.35
USP53-209ENST00000514665 DEPDC1Q5TB30 811 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 IQSEC1Q6DN90 963 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 CLVS1Q8IUQ0 354 aaPredicted RBP12.87□□□□□ -0.35
USP53-209ENST00000514665 PLD5Q8N7P1 536 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 C1orf127Q8N9H9 656 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 TNIP2Q8NFZ5 429 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 LRRC15Q8TF66 581 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 DPY30Q9C005 99 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 TRIM45Q9H8W5 580 aaPredicted RBP12.87□□□□□ -0.35
USP53-209ENST00000514665 MARCH2Q9P0N8 246 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 MYH10P35580 1976 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 LDLRP01130 860 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 TFEBP19484 476 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 AXLP30530 894 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 CD86P42081 329 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 SCIMPQ6UWF3 145 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 ULK2Q8IYT8 1036 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 ST6GALNAC4Q9H4F1 302 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 WDR55Q9H6Y2 383 aaPredicted RBP12.87□□□□□ -0.35
USP53-209ENST00000514665 POLG2Q9UHN1 485 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 FBXO5Q9UKT4 447 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 GNG14A0A1W2PPG7 69 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 PEX11AO75192 247 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 TNFAIP8O95379 198 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 PBLDP30039 288 aaPredicted RBP12.87□□□□□ -0.35
USP53-209ENST00000514665 PRKAA2P54646 552 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 CDH13P55290 713 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 CDC16Q13042 620 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 SCARA3Q6AZY7 606 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 ZDHHC24Q6UX98 284 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 ARCQ7LC44 396 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 CYP4X1Q8N118 509 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 SLC44A1Q8WWI5 657 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 PLEKHA8Q96JA3 519 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 CLPTM1LQ96KA5 538 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 LIMD1Q9UGP4 676 aa12.87□□□□□ -0.35
USP53-209ENST00000514665 RGS5O15539 181 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 HNRNPRO43390 633 aaKnown RBP12.86□□□□□ -0.35
USP53-209ENST00000514665 LRG1P02750 347 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 EPB42P16452 691 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 TMED10P49755 219 aaKnown RBP12.86□□□□□ -0.35
USP53-209ENST00000514665 NAB1Q13506 487 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 CERCAMQ5T4B2 595 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 SDHAF4Q5VUM1 108 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 ZFP1Q6P2D0 407 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 GLT6D1Q7Z4J2 308 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 CLEC4DQ8WXI8 215 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 RCN3Q96D15 328 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 MTG1Q9BT17 334 aaPredicted RBP12.86□□□□□ -0.35
USP53-209ENST00000514665 TBCDQ9BTW9 1192 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 DHX33Q9H6R0 707 aaKnown RBP12.86□□□□□ -0.35
USP53-209ENST00000514665 CLIC5Q9NZA1 410 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 ATP11BQ9Y2G3 1177 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 ANKRD6Q9Y2G4 727 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 ZNF839A8K0R7 811 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 PTGES3LE9PB15 166 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 GPR25O00155 361 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 B4GALT4O60513 344 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 C2P06681 752 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 ANPEPP15144 967 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 TSHRP16473 764 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 RAD23AP54725 363 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 IL5RAQ01344 420 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 PPIDQ08752 370 aaKnown RBP12.86□□□□□ -0.35
USP53-209ENST00000514665 BNIP1Q12981 228 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 FRG1Q14331 258 aaKnown RBP12.86□□□□□ -0.35
USP53-209ENST00000514665 XYLT1Q86Y38 959 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 RAB42Q8N4Z0 105 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 KLRG1Q96E93 195 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 CIPCQ9C0C6 399 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 SORCS3Q9UPU3 1222 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms