RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	VPS45	Q9NRW7	570 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	UBP1	Q9NZI7	540 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	FETUB	Q9UGM5	382 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	NOX1	Q9Y5S8	564 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PLCH1	Q4KWH8	1693 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TRIM38	O00635	465 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TNPO2	O14787	897 aa	Known RBP	10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	AP1G1	O43747	822 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	JUN	P05412	331 aa	Known RBP	10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	HSPA8	P11142	646 aa	Known RBP	10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	GRIA4	P48058	902 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ACTR2	P61160	394 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	GBE1	Q04446	702 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	DGCR6	Q14129	220 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SPPL2C	Q8IUH8	684 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	MAP4K3	Q8IVH8	894 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CHERP	Q8IWX8	916 aa	Known RBP	10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	OR9I1	Q8NGQ6	314 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TBC1D15	Q8TC07	691 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	STARD8	Q92502	1023 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ADI1	Q9BV57	179 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	MAGEB5	Q9BZ81	275 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TPK1	Q9H3S4	243 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	RPF2	Q9H7B2	306 aa	Known RBP	10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PRM3	Q9NNZ6	103 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ASNSD1	Q9NWL6	643 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	EMCN	Q9ULC0	261 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	COQ4	Q9Y3A0	265 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SLIT2	O94813	1529 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597		A0A1B0GUL6	1792 aa		10.81	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	HMX2	A2RU54	273 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597		M0R3G1	203 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	VNN1	O95497	513 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CHEK2	O96017	543 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TBXAS1	P24557	533 aa	Predicted RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CLC	Q05315	142 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	USP10	Q14694	798 aa	Known RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CCDC153	Q494R4	210 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SH2D5	Q6ZV89	423 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TMEM179	Q6ZVK1	233 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	IGFN1	Q86VF2	1251 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	DHFR2	Q86XF0	187 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	RYBP	Q8N488	228 aa	Predicted RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	C7orf31	Q8N865	590 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PSMA8	Q8TAA3	256 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ZFYVE19	Q96K21	471 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SNX27	Q96L92	541 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CPXM1	Q96SM3	734 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	RAVER2	Q9HCJ3	691 aa	Known RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SMOX	Q9NWM0	555 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CNOT6	Q9ULM6	557 aa	Known RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SQOR	Q9Y6N5	450 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SMCHD1	A6NHR9	2005 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SPATA31A5	Q5VU36	1347 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SPATA31A7	Q8IWB4	1347 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	MRAS	O14807	208 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	HDAC3	O15379	428 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PCNA	P12004	261 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	IL10	P22301	178 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ACAT1	P24752	427 aa	Known RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	MZF1	P28698	734 aa	Predicted RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ARPP19	P56211	112 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SLC12A1	Q13621	1099 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	KCNJ11	Q14654	390 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TIGD2	Q4W5G0	525 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	NIPAL1	Q6NVV3	410 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PID1	Q7Z2X4	250 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ADCK1	Q86TW2	530 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PGAM4	Q8N0Y7	254 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	LZTR1	Q8N653	840 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	IRGQ	Q8WZA9	623 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	DLG3	Q92796	817 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	GLMN	Q92990	594 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	RAD21L1	Q9H4I0	556 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	10.8	□□□□□ -0.68	2e-6	■■■■■ 28.1
TRAPPC12-223	ENST00000497597	PCDHGA3	Q9Y5H0	932 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	IGKV6D-41	A0A0C4DH26	115 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TRIM64C	A6NLI5	447 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	KCNK1	O00180	336 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CHAD	O15335	359 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	EXTL3	O43909	919 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	SRP72	O76094	671 aa	Known RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	DDHD2	O94830	711 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ZNF26	P17031	533 aa	Predicted RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TFEB	P19484	476 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	TNFSF9	P41273	254 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	GSS	P48637	474 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	ARPC4	P59998	168 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	FOXD4	Q12950	439 aa	Predicted RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	PPP1R8	Q12972	351 aa	Known RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	STIL	Q15468	1287 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	LRRC38	Q5VT99	294 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	RSBN1	Q5VWQ0	802 aa	Predicted RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CLEC4F	Q8N1N0	589 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CERS5	Q8N5B7	392 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	DHRSX	Q8N5I4	330 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	RP9	Q8TA86	221 aa	Known RBP	10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CPB2	Q96IY4	423 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	CEP295NL	Q96MC4	621 aa		10.8	□□□□□ -0.68
TRAPPC12-223	ENST00000497597	BIRC8	Q96P09	236 aa		10.8	□□□□□ -0.68

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