RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 RBMX2Q9Y388 322 aaKnown RBP10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MAST2Q6P0Q8 1798 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DLEC1Q9Y238 1755 aa10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MAP1BP46821 2468 aaKnown RBP10.96□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 EDF1O60869 148 aaKnown RBP10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CRCPO75575 148 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RAG1P15918 1043 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ACADSBP45954 432 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NEK2P51955 445 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 STX3Q13277 289 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RASAL3Q86YV0 1011 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DBF4BQ8NFT6 615 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TMEM209Q96SK2 561 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CADM1Q9BY67 442 aaKnown RBP10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 UPF3AQ9H1J1 476 aaKnown RBP10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PCDH9Q9HC56 1237 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TIMMDC1Q9NPL8 285 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TTC24A2A3L6 582 aaPredicted RBP10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CCL22O00626 93 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 KLHL2O95198 593 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ERCC2P18074 760 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 BGNP21810 368 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TKTP29401 623 aaKnown RBP10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GEMIN4P57678 1058 aaKnown RBP10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CDK16Q00536 496 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PTK6Q13882 451 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 LCLAT1Q6UWP7 414 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 OSTM1Q86WC4 334 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CFAP52Q8N1V2 620 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 OR52K1Q8NGK4 314 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 E2F7Q96AV8 911 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NRDE2Q9H7Z3 1164 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RNF186Q9NXI6 227 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PHF24Q9UPV7 400 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TMEM88BA6NKF7 163 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MEI4A8MW99 385 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TRMUO75648 421 aaKnown RBP10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ASLP04424 464 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ALADP13716 330 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 STIP1P31948 543 aaKnown RBP10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TRPC1P48995 793 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NEK3P51956 506 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PGGT1BP53609 377 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 AQP5P55064 265 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PDK4Q16654 411 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 FAM35AQ86V20 835 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CIR1Q86X95 450 aaPredicted RBP10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ALLCQ8N6M5 410 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 POU5F2Q8N7G0 328 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TCP10LQ8TDR4 215 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ART4Q93070 314 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PEBP4Q96S96 227 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MIOSQ9NXC5 875 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 KIAA1257Q9ULG3 409 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SOX13Q9UN79 622 aa10.95□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ADGRA2Q96PE1 1338 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DUSP11O75319 330 aaKnown RBP10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GPC4O75487 556 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 F2P00734 622 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ENO3P13929 434 aaPredicted RBP10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 UQCRBP14927 111 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TCN1P20061 433 aaPredicted RBP10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 S100A1P23297 94 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NFKBIAP25963 317 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PURAQ00577 322 aaKnown RBP10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 FOXD4Q12950 439 aaPredicted RBP10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 FLOT2Q14254 428 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 FASTKD1Q53R41 847 aaKnown RBP10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TCHHL1Q5QJ38 904 aaPredicted RBP10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MARCH8Q5T0T0 291 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 LPCAT4Q643R3 524 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 OTOAQ7RTW8 1153 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DHDDSQ86SQ9 333 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 BLOC1S5Q8TDH9 187 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 HTR3CQ8WXA8 447 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 JADE3Q92613 823 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PPP1R14BQ96C90 147 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CMTM5Q96DZ9 223 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 KLHL5Q96PQ7 755 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MECRQ9BV79 373 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NT5MQ9NPB1 228 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 C15orf38-AP3S2A0A0A6YYH1 394 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 C2orf71A6NGG8 1288 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 HSPA4LO95757 839 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PENKP01210 267 aaPredicted RBP10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PIGRP01833 764 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 KRT8P05787 483 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CCNB1P14635 433 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NSUN2Q08J23 767 aaKnown RBP eCLIP10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MFSD5Q6N075 450 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 C15orf39Q6ZRI6 1047 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ACAD11Q709F0 780 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ARPINQ7Z6K5 226 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PLD5Q8N7P1 536 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PNPLA1Q8N8W4 532 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PCDH19Q8TAB3 1148 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PHF12Q96QT6 1004 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 FOXP3Q9BZS1 431 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 POPDC2Q9HBU9 364 aa10.94□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PLK2Q9NYY3 685 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms