RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 HTR7P34969 479 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 FDFT1P37268 417 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 GARSP41250 739 aaKnown RBP12.44□□□□□ -0.42
HDAC6-230ENST00000488543 TBX4P57082 545 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 C10orf120Q5SQS8 335 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 RBM23Q86U06 439 aaKnown RBP12.44□□□□□ -0.42
HDAC6-230ENST00000488543 SLC22A17Q8WUG5 538 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 GDF15Q99988 308 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 SEPT10Q9P0V9 454 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 A0A1W2PPM1 405 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 C5orf67F2Z3F1 127 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 F5H423 210 aaPredicted RBP12.43□□□□□ -0.42
HDAC6-230ENST00000488543 KCNK1O00180 336 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 NRG2O14511 850 aaPredicted RBP12.43□□□□□ -0.42
HDAC6-230ENST00000488543 NCAM2O15394 837 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 TLR5O60602 858 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 SUN1O94901 812 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 MOCS2O96007 188 aaPredicted RBP12.43□□□□□ -0.42
HDAC6-230ENST00000488543 PSEN1P49768 467 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 MLLT6P55198 1093 aaPredicted RBP12.43□□□□□ -0.42
HDAC6-230ENST00000488543 TRIP4Q15650 581 aaPredicted RBP12.43□□□□□ -0.42
HDAC6-230ENST00000488543 TAF12Q16514 161 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 RWDD4Q6NW29 188 aaKnown RBP12.43□□□□□ -0.42
HDAC6-230ENST00000488543 TDRPQ86YL5 185 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 ZSCAN18Q8TBC5 510 aaPredicted RBP12.43□□□□□ -0.42
HDAC6-230ENST00000488543 MAML1Q92585 1016 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 CELF6Q96J87 481 aaKnown RBP12.43□□□□□ -0.42
HDAC6-230ENST00000488543 TMEM237Q96Q45 408 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 GORASP1Q9BQQ3 440 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 CCDC77Q9BR77 488 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 BRD8Q9H0E9 1235 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 PLAC1Q9HBJ0 212 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 ZNF334Q9HCZ1 680 aaPredicted RBP12.43□□□□□ -0.42
HDAC6-230ENST00000488543 LZTS1Q9Y250 596 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 IRAK3Q9Y616 596 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 GBF1Q92538 1859 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 C2orf78A6NCI8 922 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 ZNF840PA6NDX5 716 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 EIF4E1BA6NMX2 242 aaKnown RBP12.43□□□□□ -0.42
HDAC6-230ENST00000488543 E9PAM4 449 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 CDH16O75309 829 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 STK10O94804 968 aaKnown RBP12.43□□□□□ -0.42
HDAC6-230ENST00000488543 IGLV3-27P01718 113 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 ADH1AP07327 375 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 CSH1P0DML2 217 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 CSH2P0DML3 217 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 PSMB4P28070 264 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 SERPINB6P35237 376 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 GRIA1P42261 906 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 WLSQ5T9L3 541 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 TMEM150AQ86TG1 271 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 KREMEN2Q8NCW0 462 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 KLHL29Q96CT2 875 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 C1orf74Q96LT6 269 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 CEP295NLQ96MC4 621 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 TACO1Q9BSH4 297 aaKnown RBP12.43□□□□□ -0.42
HDAC6-230ENST00000488543 IGSF9Q9P2J2 1179 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 PRUNE2Q8WUY3 3088 aa12.43□□□□□ -0.42
HDAC6-230ENST00000488543 FGF10O15520 208 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-230ENST00000488543 RFPL2O75678 378 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 MX2P20592 715 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 ZBTB17Q13105 803 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 PARP6Q2NL67 630 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 GALNTL6Q49A17 601 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 AFMIDQ63HM1 303 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 C3orf62Q6ZUJ4 267 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 GPR65Q8IYL9 337 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 RIBC1Q8N443 379 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-230ENST00000488543 GIMAP7Q8NHV1 300 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 FBF1Q8TES7 1133 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 ARNTL2Q8WYA1 636 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 CYP2S1Q96SQ9 504 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 KLF6Q99612 283 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-230ENST00000488543 DHRS4Q9BTZ2 278 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 RNF38Q9H0F5 515 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 NKX2-4Q9H2Z4 354 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 ACSS3Q9H6R3 686 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 YY1AP1Q9H869 796 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 EIF2B3Q9NR50 452 aaKnown RBP12.42□□□□□ -0.42
HDAC6-230ENST00000488543 OLA1Q9NTK5 396 aaKnown RBP12.42□□□□□ -0.42
HDAC6-230ENST00000488543 NDFIP2Q9NV92 336 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 NKIRAS1Q9NYS0 192 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 MARCH2Q9P0N8 246 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 HSFX1Q9UBD0 423 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 SSX2IPQ9Y2D8 614 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 ANAPC1Q9H1A4 1944 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 WDR91A4D1P6 747 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 RFXAPO00287 272 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 ZNF189O75820 626 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-230ENST00000488543 C1QAP02745 245 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 C8AP07357 584 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 GSTA1P08263 222 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 SLC2A3P11169 496 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 RPA3P35244 121 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-230ENST00000488543 TUBP50607 506 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 CLCN4P51793 760 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 EPHB3P54753 998 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 GPM6BQ13491 265 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 ARHGAP36Q6ZRI8 547 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 PALM2Q8IXS6 379 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms